Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c21
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    28   2.3  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    28   2.3  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    28   2.3  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    28   2.3  
Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 269 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 403
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 269 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 403
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 269 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 403
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 306 YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 193
           ++VT  ++ +CFS+L +       I   +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210


>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 251 VKLIKLEKHTLCRGIVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLTAQT 412
           + ++ L   TLC  +V I+F+A I     L   +      R L +V + +  QT
Sbjct: 201 ISILHLFHFTLCFVLVIIFFVATILGLTMLKQRIKSAE--RSLTIVTMIMAVQT 252


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 334 KEHCNNCNEIYCYNSTAQR 278
           K HC NC +I+C  ST  R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 334 KEHCNNCNEIYCYNSTAQR 278
           K HC NC +I+C  ST  R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 228 QCFVCIYIRRKIHRF 184
           QC VC Y R+K  RF
Sbjct: 383 QCMVCCYFRKKARRF 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,569,642
Number of Sequences: 27780
Number of extensions: 115503
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)