Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c21
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   9.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 296 VTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 403
           +T++F+ +  +    S TVP   +  +  MV++TL+
Sbjct: 278 LTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLS 313


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 250 CETDQTRKTYAVPWNCNNIFHCNYYNV 330
           CE  Q +K  A    C + F+C  Y +
Sbjct: 591 CEVGQAKKYVAGEQCCWHCFNCTQYQI 617


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 300 QYISLQLLQCSFVCRQLSRKHGVFV 374
           Q +SL  +Q      ++ RKH VFV
Sbjct: 255 QSLSLTNIQLEHFEMKIKRKHNVFV 279


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 360 VFGTVDDKQRNIVIIAMK 307
           + G VDD QRN  ++  K
Sbjct: 112 LLGIVDDYQRNPSVVGRK 129


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 305 YFIAIITMFLCLSSTVPKT 361
           +FI I T  + L + VP T
Sbjct: 413 FFIVIFTYIIILITLVPST 431


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 272 KHTLCRGIVTIYFIAI 319
           K+  C GI ++Y IAI
Sbjct: 115 KNQNCSGITSVYRIAI 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,093
Number of Sequences: 438
Number of extensions: 1359
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)