Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c20
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058 36 0.029
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 32 0.63
01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248 32 0.63
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 31 1.4
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 31 1.4
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 30 1.9
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459... 30 2.5
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731... 29 4.4
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789... 28 7.7
06_03_0399 - 20403488-20405092 28 7.7
05_01_0136 + 915140-915487,915781-916392 28 7.7
>02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058
Length = 365
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = -2
Query: 581 RERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLL 447
RER R++ ++ FA +RRLVP P +K S+ EI+ AI YI +L
Sbjct: 95 RERERRRRMNDMFAGIRRLVPNLP--EKSSRVEIIDGAIAYIKML 137
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -1
Query: 249 KSGVVKRKGLRETGFVFREGTP*GVETPVLLFAEVETDLPVQKSGRSQRE*LAD 88
+SGVV+ + LRE G REGT +ET + L E L +++R+ + D
Sbjct: 168 RSGVVQERALRE-GETLREGTYLDIETELRLVGEQRQQLEDAGDAKAERKAMKD 220
>01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248
Length = 248
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -2
Query: 602 RKLFTNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLE 432
RKL N ER R++ ++ ++ LR L+P KKLS + ++YI L + +E
Sbjct: 69 RKLSHNAYERDRRKQLNELYSSLRALLPDADHTKKLSIPTTVSRVLKYIPELQKQVE 125
>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Frame = -2
Query: 443 EVLEWQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCF-DEDGPRAKLYHDQEEYF 267
E +EWQ V E C P S R F D D A L ++ + F
Sbjct: 1747 EWVEWQTTALVKRNEVENVYHWACGRPTSLHDRGRDSDDDDFRDRDYDVAALANNLSQAF 1806
Query: 266 RYGNEENQELLRGKGLGR--PDLYFGKEHLRVL 174
RYG N ++ + + R D+YF E V+
Sbjct: 1807 RYGMYSNDDIEEAQVIERDDEDVYFDDESAEVV 1839
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -2
Query: 578 ERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLEWQKNHSVTNKE 399
ER R++ ++ F EL ++P KK+ K IL A+RY+ + E L + H E
Sbjct: 197 ERKRREKINQRFIELSTVIPGL---KKMDKATILSDAVRYVKEMQEKLSELEQHQNGGVE 253
Query: 398 NSGSLAIKC 372
++ L C
Sbjct: 254 SAILLKKPC 262
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 536 LRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVLEWQKNHSVTNKENSGSL 384
LR + PP+KK+S+ R A R + LL L+ + + KE G L
Sbjct: 163 LRMIGVEKPPEKKISEENQRRYAFRIVDLLLPWLKELQQEQMKEKELEGRL 213
>01_07_0022 -
40543912-40544004,40545060-40545229,40545850-40545971,
40549272-40550909,40553212-40553720
Length = 843
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 530 RLVPTHPPDKKLSKNEILRMA-IRYIGLLCEVLEWQKNHSVTNKENSGSLAIK 375
R++ H + K NEI M IRY+GL C LE + SV+N N SL +K
Sbjct: 617 RVIDIHGLELKKLPNEIGSMIHIRYLGLQCGQLE-KLPPSVSNLVNLQSLILK 668
>01_05_0502 +
22771428-22771466,22772327-22772430,22773043-22773129,
22773212-22773287,22773393-22773467,22773639-22773692,
22773745-22773918,22774002-22774061,22774135-22774251,
22774448-22774542,22774811-22775013,22775177-22775274,
22775451-22775587,22776154-22776219,22776300-22776465,
22776537-22776659,22776763-22776845,22776943-22777084,
22777334-22777363,22777587-22777657,22777742-22778333
Length = 863
Score = 29.1 bits (62), Expect = 4.4
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Frame = -2
Query: 443 EVLEWQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCF-DEDGPRAKLYHDQEEYF 267
E ++WQ + V E C P S R F D D A L ++ + F
Sbjct: 562 EWVDWQTDVLVKRNEVENVYHWACGRPTSLHDRGRDSDDDDFRDRDYDVAALANNLSQAF 621
Query: 266 RYGNEENQELLRGKG-LGR--PDLYFGKEHLRVL 174
RYG N ++ +G L R D+YF E V+
Sbjct: 622 RYGIYSNDDMEENQGTLERDDEDVYFDDESAEVV 655
>10_08_0075 -
14676835-14677173,14677776-14678426,14678734-14678948,
14679510-14679783,14680249-14680410
Length = 546
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = -2
Query: 491 KNEILRMAIRYIGLLCEVLEW-------QKNHSVTNKENSGSLAIKCESPLS 357
+ E L + +R++ +++EW + S+T KE SL IKC PLS
Sbjct: 165 QQEQLALCLRFVNKTGQLVEWFLGLVHVEDTTSLTLKEAIKSLLIKCHLPLS 216
>06_03_0399 - 20403488-20405092
Length = 534
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 272 YFR-YGNEENQELLRGKGLGRPDLYF 198
YF YG + E+L +G GRPD YF
Sbjct: 343 YFAFYGTGKPPEMLLDRGTGRPDRYF 368
>05_01_0136 + 915140-915487,915781-916392
Length = 319
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 431 WQKNHSVTNKENSGSLAIKCESPLSPQSRRLRLKRQCFDEDGPRAKLYHDQEEYFRYGNE 252
W+ + NK +G AIKC+ +S +S + LK + K +H+ +E F N
Sbjct: 84 WKIVETALNKSGNGFDAIKCKLTIS-ESEKATLKDRDRRLLSKPIKYFHEMQELFSGSNA 142
Query: 251 E 249
+
Sbjct: 143 D 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,435,690
Number of Sequences: 37544
Number of extensions: 495102
Number of successful extensions: 1361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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