Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c20
(816 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 55 9e-10
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 27 0.27
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 2.6
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 2.6
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 4.5
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 5.9
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 5.9
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 5.9
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 5.9
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 5.9
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 5.9
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 5.9
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 5.9
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 5.9
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 5.9
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 7.8
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 7.8
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 7.8
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 7.8
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 54.8 bits (126), Expect = 9e-10
Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Frame = -2
Query: 734 EPDSEMXXXXXXXXXXXXXSRQPRTIQNISEELSNLNPCLLRPPRK------------LF 591
EP S R+ TI+N SE SN + + RK +
Sbjct: 198 EPSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRVM 257
Query: 590 TNCRERWRQQNVSGAFAELRRLVPTHPPDKKLSKNEILRMAIRYIGLLCEVL 435
N RER R Q+++ AFA LR+++PT P D KLSK + L++A RYI L +VL
Sbjct: 258 ANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLATRYIDFLFQVL 308
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 26.6 bits (56), Expect = 0.27
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 551 GAFAELRRLVPTH-PPDKKLSKNEILRMAIRYIGLLCEVLEWQKNHSVTNKENSGSLAIK 375
G ELR++ + PD +L + + +R+ + C+VL WQ S N + AI+
Sbjct: 28 GPIYELRQIEEENIEPDTELMDSNEPLLPLRHRRVTCDVLSWQ---SKWLSINHSACAIR 84
Query: 374 C 372
C
Sbjct: 85 C 85
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 23.4 bits (48), Expect = 2.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 202 YKSGLPKPFPLNNS*FSSLPYRKY 273
Y +G+ FP N FSSLPY KY
Sbjct: 303 YSNGVT--FPQRNR-FSSLPYYKY 323
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 23.4 bits (48), Expect = 2.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 202 YKSGLPKPFPLNNS*FSSLPYRKY 273
Y +G+ FP N FSSLPY KY
Sbjct: 303 YSNGVT--FPQRNR-FSSLPYYKY 323
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 22.6 bits (46), Expect = 4.5
Identities = 11/48 (22%), Positives = 21/48 (43%)
Frame = +2
Query: 623 GSDLTALPKYSVLFSAVCCHHRCRGDTGRHSASHCQAPRPNKTLDPTP 766
G ++ P + + C HR R ++G S+ + R + + P P
Sbjct: 518 GHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQP 565
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 48 KLYKNEREYRKYG-ETSKERSRNR 70
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 48 KLYKNEREYRKYG-ETSKERSRNR 70
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 48 KLYKNEREYRKYG-ETSKERSRNR 70
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 48 KLYKNEREYRKYG-ETSKERSRNR 70
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 281 KLYKNEREYRKYG-ETSKERSRNR 303
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 281 KLYKNEREYRKYG-ETSKERSRNR 303
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 281 KLYKNEREYRKYG-ETSKERSRNR 303
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 281 KLYKNEREYRKYG-ETSKERSRNR 303
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 281 KLYKNEREYRKYG-ETSKERSRNR 303
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 296 KLYHDQEEYFRYGNEENQELLRGK 225
KLY ++ EY +YG E ++E R +
Sbjct: 270 KLYKNEREYRKYG-ETSKERSRNR 292
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 7.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -2
Query: 590 TNCRER-WRQQNVSGAFAELRRLVPTHP 510
TNC +G AELR+ P HP
Sbjct: 428 TNCGPNPCTHTTTNGCTAELRKKEPPHP 455
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 7.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -2
Query: 590 TNCRER-WRQQNVSGAFAELRRLVPTHP 510
TNC +G AELR+ P HP
Sbjct: 414 TNCGPNPCTHTTTNGCTAELRKKEPPHP 441
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 7.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -2
Query: 590 TNCRER-WRQQNVSGAFAELRRLVPTHP 510
TNC +G AELR+ P HP
Sbjct: 448 TNCGPNPCTHTTTNGCTAELRKKEPPHP 475
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 7.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -2
Query: 590 TNCRER-WRQQNVSGAFAELRRLVPTHP 510
TNC +G AELR+ P HP
Sbjct: 397 TNCGPNPCTHTTTNGCTAELRKKEPPHP 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,327
Number of Sequences: 438
Number of extensions: 4652
Number of successful extensions: 28
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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