Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c19
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.0  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.6  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   6.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 47   HSVHVEHNFVKXNNTHVFILTYXSHIP 127
            +S HVE+++ + + TH  I+    H P
Sbjct: 1374 YSCHVENDYGQDSVTHQLIVNAPPHAP 1400


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 438 QS*IFIHITISQDVVVSVKNCTIF 509
           QS IFI++   +  ++ +KNC I+
Sbjct: 127 QSGIFINLPFLEHNLIRLKNCVIY 150


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 492 KNCTIFVIFVHLYCGKMLISF 554
           KNCTI +IF HL    +L+ F
Sbjct: 40  KNCTIVIIF-HLILFAVLLYF 59


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = -3

Query: 270 YAVIFVYMQIRFMVKFDYNQINHS*TDIV 184
           +  IF Y+ +   V + ++ I+H+ ++I+
Sbjct: 136 FLYIFTYLSVTCYVTYAWSPIDHTESNII 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,871
Number of Sequences: 336
Number of extensions: 3846
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)