Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c19
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.8  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    27   3.8  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        26   5.0  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    26   6.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   8.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.8  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 401 PRSEKILGLFVGTKLDIYSHNYKSRCGCLSKKLHNFCYFC 520
           PR   +L   V  +LD       S CG L+++ HNF   C
Sbjct: 95  PRLVVVLPWTVLQELDGLKSESSSTCGYLARQAHNFLLQC 134


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 169 EVFVHNYISSGMINLIIIKFYHKTYLHVHKNNCIFIYL 282
           ++ + N    GM+      FY K Y H H+ N  F+ L
Sbjct: 569 KILILNNEEQGMVTQWQNLFYEKRYSHTHQKNPNFVKL 606


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 491 Y*DNHILTYS-YVNKYLALYLQTNPRSSLILA*TPECL 381
           Y +N ILT +  V+ YL  YLQ NP  + IL   P+ L
Sbjct: 77  YMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVL 114


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = -1

Query: 659 IHQQN---LTRRRKR-KQELKSPWKWRLLPSKNT*VPRNK*Y*HFSTI*MDKNNKNCAIF 492
           +HQ+N   L RR++R K+E K P K RL  S+N          +  TI  DK ++     
Sbjct: 18  LHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAE 77

Query: 491 Y*DNHILTY-SYVNKYLALYLQTNPRSS 411
             D+    Y S   K   L + T+ R+S
Sbjct: 78  LKDDEFSAYFSEERKVPKLLVTTSKRAS 105


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 574 IHKCPGINDINIFPQYKWTKITKIVQFF 491
           +++ PG ND++++P ++   I  I+  F
Sbjct: 449 VNEIPGWNDVDLYPLFRALSIPNILVLF 476


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 100  YFNIXKSHSS-LKNETFKLLTSQREVFVHNYISSGMINLIIIKFYHKTYLHVHKNNCIFI 276
            Y  + K   S + N +  L  +Q E+F H  +  G   LI  +  ++ ++ +   N  F+
Sbjct: 1642 YVEVRKEAGSYILNPSLDLKHTQ-EMFEHKLVEGGWKGLIASQPSNRDFIKMLSGNDFFL 1700

Query: 277  YLQNG 291
            Y  +G
Sbjct: 1701 YFGHG 1705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,350
Number of Sequences: 5004
Number of extensions: 59062
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)