Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c19
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                28   7.1  
SB_41656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 371 SINEGILVSKPRSEKILGLFVGTKLDIYSHNYKSRCGCLSKKLHNFCYFCPFILWKNV 544
           ++ +G+L +  R+E I  +    K++I    Y S C    KK H FC    F  +KN+
Sbjct: 754 NVKQGVLSTNQRAEAISNI----KMEIMGGLYHS-CKLPVKKRHQFCPVNSFCAYKNL 806


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +1

Query: 172 VFVHNYISSGMINLIIIKFYHKTYLHVHKNNCIFIYLQNGYIK*LVHTYVK 324
           V+ H    S ++ +II+  Y K +LH+H+++    Y QN + +  +H ++K
Sbjct: 284 VYRHGAGGSYIVVIIIVNIY-KNHLHLHQHH-HHHYRQNRFTQISIHRFLK 332


>SB_41656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 629 KRKQELKSPWKWRLLPSKNT 570
           KR  E ++P+ WR LPSK T
Sbjct: 4   KRPYERETPFSWRPLPSKGT 23


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,889,957
Number of Sequences: 59808
Number of extensions: 418250
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)