Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c19
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72505-7|CAA96614.1|  333|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z70780-16|CAA94829.1|  333|Caenorhabditis elegans Hypothetical p...    32   0.38 
AF098504-6|ABO52818.1|  300|Caenorhabditis elegans Serpentine re...    31   0.67 
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    31   1.2  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    28   6.2  
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC024757-10|AAF59455.1|  384|Caenorhabditis elegans Hypothetical...    28   8.2  

>Z72505-7|CAA96614.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.1 protein.
          Length = 333

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +2

Query: 260 ITAYLFTYKMAT*SN*YTLM*KKLDTKVEKLLCYKMYSINEGILVSKPRSEKILGLFVGT 439
           +TA L  +K+       + + +K D K EK+L   M  I   ++V  P +   + LF  +
Sbjct: 219 VTAILMFFKLLQKRKISSELHRKTDLKSEKVLTATMILILLPVVV--PATLSFVNLFAPS 276

Query: 440 KLDIYSHNYKSRCGCLSKKLHNF-CYF 517
               Y + + SRC CL  + H   CYF
Sbjct: 277 A---YPYIFLSRCICLDARAHFVSCYF 300


>Z70780-16|CAA94829.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.1 protein.
          Length = 333

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +2

Query: 260 ITAYLFTYKMAT*SN*YTLM*KKLDTKVEKLLCYKMYSINEGILVSKPRSEKILGLFVGT 439
           +TA L  +K+       + + +K D K EK+L   M  I   ++V  P +   + LF  +
Sbjct: 219 VTAILMFFKLLQKRKISSELHRKTDLKSEKVLTATMILILLPVVV--PATLSFVNLFAPS 276

Query: 440 KLDIYSHNYKSRCGCLSKKLHNF-CYF 517
               Y + + SRC CL  + H   CYF
Sbjct: 277 A---YPYIFLSRCICLDARAHFVSCYF 300


>AF098504-6|ABO52818.1|  300|Caenorhabditis elegans Serpentine
           receptor, class t protein61 protein.
          Length = 300

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +2

Query: 350 LLCYKMYSINEGILVSKPRSEKILGLFVGTKLDIYSHNYKSRCGCLSKKLHNFCYFCPFI 529
           L+ Y++    +  L+SK  + +I  L   T + +Y       C  L+   HN+ +  P  
Sbjct: 221 LIIYRLVKTKKRFLISKSYNAEIKVLIQATVITVY-------CTVLNVLWHNYSWMLPQN 273

Query: 530 LWKNVNIIYSWAL 568
           LW    + + W L
Sbjct: 274 LWSYTALNFMWIL 286


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 753 SGTHRITGLPFDKSQCKSERSIKDPE 676
           +G  +I GLPFD    +S+ ++KDPE
Sbjct: 339 NGLLKIAGLPFDSDVYQSDLTVKDPE 364


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +1

Query: 100 YFNIXKSHSSLKNETFKLLTSQREVFVHNYISSGMINLIIIKFYHKTYLHVHKNNCIFIY 279
           Y +I  +H +  N T +  T  +E+     + S  IN+++ K  +K  L+ +K+N   I 
Sbjct: 437 YNDIIITHENTVNPTVEFNTINKEI-----VGSKKINILLPKHLYKKLLNKNKSNISIIK 491

Query: 280 LQNGY 294
           +++ Y
Sbjct: 492 VKDVY 496


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 294 HKVISTHLCERNWTLKLKSYYAIKCI 371
           HKV ST+L E NW  K K +  +KC+
Sbjct: 253 HKVDSTYLSEANWEPK-KYHKNVKCV 277


>AC024757-10|AAF59455.1|  384|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.1 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 124 SSLKNETFKLLTSQREVFVHNYISSGMINLI--IIKFYHKTYLHVH 255
           S ++ +  +  T    V +  Y+ S +++LI  I+++++  YLHV+
Sbjct: 236 SKIRKKNLRSATRTLIVIISAYLISNLLSLILIIVEYFNPDYLHVY 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,433
Number of Sequences: 27780
Number of extensions: 333306
Number of successful extensions: 663
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)