Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c18
         (204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   3.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    23   4.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   7.3  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        23   7.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    22   9.7  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    22   9.7  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 40  SIFLYLQFSFCSANVIASDNGTRPCNIKANNFNKL 144
           S +L     FC  N+   D     C+I   +  KL
Sbjct: 822 SAYLLKSIKFCDPNITPHDGDASLCDISEGSARKL 856


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 112 CNIKANNFNKLLCNVVLS 165
           C+I+ NN + L+C++ LS
Sbjct: 734 CSIRENNLDGLVCSLPLS 751


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 49   LYLQFSFCSANVI 87
            LYL+ SFCS+N +
Sbjct: 1208 LYLKVSFCSSNFL 1220


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 126 SFNITGSGSVVRRYNVCGTKTK 61
           S+N+ G G+   +Y+ C  K K
Sbjct: 110 SYNLAGGGNFQYQYSTCQGKRK 131


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 101  PLSDAITFAEQKLNCKYKKIEF 36
            PL  + + A + L+CKYK+  F
Sbjct: 1402 PLPKSFSKAVEALSCKYKQSGF 1423


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 101 EPDPVILKLTILTNYCA 151
           E +P++ KL  L  YCA
Sbjct: 337 EKEPILQKLNELITYCA 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,246
Number of Sequences: 5004
Number of extensions: 7345
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)