Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c16
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22176-6|CAA80139.1| 133|Caenorhabditis elegans Hypothetical pr... 79 3e-15
Z35719-3|CAA84797.1| 347|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40419-5|AAA81426.1| 165|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68317-5|CAA92689.2| 165|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina... 29 3.1
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul... 29 3.1
U23179-4|AAK68209.1| 341|Caenorhabditis elegans Serpentine rece... 29 4.1
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 28 5.5
U00066-1|AAA50742.1| 490|Caenorhabditis elegans High incidence ... 28 7.2
AF016447-13|AAG24017.1| 334|Caenorhabditis elegans Serpentine r... 27 9.6
>Z22176-6|CAA80139.1| 133|Caenorhabditis elegans Hypothetical
protein ZK1098.7 protein.
Length = 133
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Frame = -1
Query: 549 SRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKY-ARPNLVVKEIRPIL 373
+R ER G IF+RV GL+ G + DRPLW+DVY + PP+T P + + + IR I
Sbjct: 6 TRAERSGNIFSRVTGLIRAGQLNWADRPLWYDVYVSSPPLTPPDWNVKLAKYDEPIRSIF 65
Query: 372 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDKLKAEG--IPEDEIIE 214
Y+EDVLRAKF+ A + ++ S + +++ + +Y +K+E +D++ E
Sbjct: 66 YEEDVLRAKFYKTYRSTAGIQ-VDSSRTSVSQQFINEYKLVKSENAEATDDQLFE 119
>Z35719-3|CAA84797.1| 347|Caenorhabditis elegans Hypothetical
protein F17C8.5 protein.
Length = 347
Score = 31.9 bits (69), Expect = 0.44
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 31 STTXLGCVLIL*SSTLFV-VENIFYISFSQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCL 204
S+ L + +L SS LF +ENI Y+S S Y G I +F I + + V F GYC+
Sbjct: 206 SSLLLCSISLLSSSALFSSIENISYLS-SVYFGI--ITMFLIGIGDIVPTNLVWFSGYCM 262
Query: 205 CGFLNDFIFRNAFCF 249
++D + F F
Sbjct: 263 LFLISDVLSNQIFYF 277
>Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical
protein C17E4.1 protein.
Length = 425
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/37 (32%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = -1
Query: 303 NQSNETQTKRLVQQYDKLKAE-GIPEDEIIEKAAQAV 196
N+ N+ +TKR ++Y+K+K++ G+P+ ++ + A +V
Sbjct: 143 NRKNQVETKREEKKYEKVKSDLGVPQADVQKNAPPSV 179
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 393 KEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDK 253
K +RP+ D L+ KF +N L V +NQ T +Q YDK
Sbjct: 42 KAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
>U40419-5|AAA81426.1| 165|Caenorhabditis elegans Hypothetical
protein C27F2.6 protein.
Length = 165
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 31 STTXLGCVLIL*SSTLFV-VENIFYISFSQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCL 204
S+ L + +L SS LF +ENI Y S S Y G + IF + + + V F GYCL
Sbjct: 24 SSLLLCSISLLSSSALFSSIENISYQS-SAYFGF--MTIFGISFGDIVPTNLVWFSGYCL 80
Query: 205 CGFLNDFIFRNAFCF 249
++D + + F F
Sbjct: 81 FFLISDVLSNHIFYF 95
>Z68317-5|CAA92689.2| 165|Caenorhabditis elegans Hypothetical
protein T01H3.5 protein.
Length = 165
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/95 (22%), Positives = 43/95 (45%)
Frame = -1
Query: 372 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAVA 193
+K DVLR F YG++ + +LN+ ++ +L + + + I E+ EK +
Sbjct: 3 WKNDVLR--FSGFDYGVSKIRMLNEELHSECDQLSKSNESTSLKDITEEPKDEKLESIIE 60
Query: 192 VERHSYAAQKLNVTPKNPDSVTAQVLAEADIKNIF 88
++ + ++ N N A + E I+N +
Sbjct: 61 TAKNKESEKEENSHVFNDCEFDA--MTERKIENFY 93
>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
receptor T17A3.1 protein.
Length = 1083
Score = 29.1 bits (62), Expect = 3.1
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = -1
Query: 471 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 295
R +W KA I + P + ++R + L+AK S L A ++
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386
Query: 294 NETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 151
N T T R + Y+ + EG P DEI+EK A +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428
>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 1
protein.
Length = 1083
Score = 29.1 bits (62), Expect = 3.1
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = -1
Query: 471 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 295
R +W KA I + P + ++R + L+AK S L A ++
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386
Query: 294 NETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 151
N T T R + Y+ + EG P DEI+EK A +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428
>U23179-4|AAK68209.1| 341|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 3 protein.
Length = 341
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 79 FVVENIFYISFSQYLGCNGIRIFRCNIQFLCSIAVAF 189
F+ IF++ F L C I F CN+ F ++ AF
Sbjct: 42 FITRKIFFLHFHGNLKCLLIVYFICNLLFSMALCFAF 78
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 300 QSNETQTKRLVQQYDKLKAEGIPEDEIIEKAAQAVAVE-RHSYAAQKLNVTPKNP 139
+ E + ++ + + EG+ E+EI+E + A++ E YA K + P P
Sbjct: 694 EEEEEEPNQIPMASEHIDIEGVDEEEIMEHSVNAISEEILFEYADDKRDDGPSTP 748
>U00066-1|AAA50742.1| 490|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 10 protein.
Length = 490
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 393 KEIRPILYKEDVLRAKFHS--NGYGLAPVSLLNQSNE-TQTKRLVQQYDKLKAEGIPEDE 223
K+ +L K+ + + H N A L N NE T+T+++ ++ DK K E I +
Sbjct: 163 KKKNDLLAKQSIRKRHEHELINEQSNAKAELKNVVNEYTETRQINEELDKQKEEAILHIQ 222
Query: 222 IIEK 211
+EK
Sbjct: 223 ALEK 226
>AF016447-13|AAG24017.1| 334|Caenorhabditis elegans Serpentine
receptor, class h protein268 protein.
Length = 334
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 43 LGCVLIL*SSTLFVVENIFYISFSQYLGCNGIRIFRCNIQFLCSIAVAFDGYCL 204
L V ++ ++ + ++EN +YI F+Q RI + CS+A + L
Sbjct: 96 LTLVAVVSAAAIDIIENRYYIVFAQNTKWRRYRIILTIFNYSCSLAWTLPAFIL 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,825,165
Number of Sequences: 27780
Number of extensions: 280519
Number of successful extensions: 740
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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