Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c15
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 133 5e-32
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 59 1e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 57 5e-09
04_04_0303 + 24269467-24270741 31 0.22
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 3.6
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 4.7
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 27 6.2
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 6.2
06_03_0784 - 24557089-24557198,24557296-24560725 26 8.2
06_01_0462 - 3285667-3288123 26 8.2
02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318... 26 8.2
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 26 8.2
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 133 bits (321), Expect = 5e-32
Identities = 58/78 (74%), Positives = 65/78 (83%)
Frame = -3
Query: 328 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 149
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66
Query: 148 QPTGGRARLTEGCSFRRK 95
QPTGG+ARLTEGCSFRRK
Sbjct: 67 QPTGGKARLTEGCSFRRK 84
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 58.8 bits (136), Expect = 1e-09
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = -3
Query: 328 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 191
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ++ F A
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 56.8 bits (131), Expect = 5e-09
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -3
Query: 328 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 212
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ +
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45
>04_04_0303 + 24269467-24270741
Length = 424
Score = 31.5 bits (68), Expect = 0.22
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -3
Query: 331 AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 152
A+ LLHP L ++PH S +D CP Y+I ++ RVV C+++
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197
Query: 151 CQPTGGRA 128
C TG A
Sbjct: 198 CSATGAGA 205
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -3
Query: 349 AVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 194
AV L L+ + ASERRK K+ L N + + YK V SH
Sbjct: 51 AVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102
>03_02_0238 -
6687334-6687421,6687456-6687512,6688266-6688351,
6688410-6688589
Length = 136
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 223 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 131
CYKI+ ++SH Q ++ C IL +PTG R
Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121
>08_01_0392 -
3454224-3454325,3454926-3455035,3455496-3455609,
3455930-3456043,3456474-3456531
Length = 165
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 259 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 134
PN + C GC + ++ V CA CST+ P G
Sbjct: 18 PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 193 AQRVVVCAGCSTILCQPTGGRARLTEGCS 107
AQ +VC+GC +L P G + CS
Sbjct: 21 AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 346 VTMPLAIDLLHPSPASERRKHK 281
+T P DL + +PA++RR+HK
Sbjct: 98 LTQPFPADLPNNAPAAQRREHK 119
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 355 IKAVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVK 233
++ +T+P + HP S H L+ L HP+S FMD +
Sbjct: 617 LRCLTLP---NTNHPLSDSLCSLHHLRMLSVHPHSCFMDTR 654
>06_01_0462 - 3285667-3288123
Length = 818
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 75 LDRALFNFKIFFPIV*WSDIFQV 7
LDR LF++ FP++ WS + +
Sbjct: 614 LDRLLFDYHNLFPVLKWSQRYNI 636
>02_05_1346 -
35831261-35831371,35831609-35831779,35831850-35831888,
35831987-35832049,35832616-35832679,35832709-35832778,
35832866-35832934,35833101-35833186,35833670-35833800,
35834021-35834083,35834166-35834211,35834542-35834618,
35834690-35834724,35835480-35835542,35835632-35835719,
35836027-35836077,35836201-35836269
Length = 431
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 281 LMFPPLRRRGRMQQINCERHGYSFNAQ 361
L FPP G Q C++HG F+A+
Sbjct: 207 LYFPPPHNIGMQQSDICKKHGKYFSAK 233
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 197 TKNCCNLVTARALNIHEIRVRMWH*PLKLMFPPLRRRGRMQQINCERHGYS 349
T +CC + A L+ E RV + PL+++ L RG + Q+N G S
Sbjct: 679 TAHCCFICRAGVLSAGECRVAVGVDPLEVL-DRLPDRGAVHQMNRREAGNS 728
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,483
Number of Sequences: 37544
Number of extensions: 184440
Number of successful extensions: 454
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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