Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c12
(293 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118790-1|AAM50650.1| 68|Drosophila melanogaster GH15688p pro... 43 8e-05
AE014296-3570|AAF51742.1| 68|Drosophila melanogaster CG7181-PA... 43 8e-05
AF181636-1|AAD55422.1| 682|Drosophila melanogaster BcDNA.GH0726... 28 1.8
AE014134-2078|AAS64682.1| 682|Drosophila melanogaster CG31705-P... 28 1.8
AE014134-2077|AAS64681.1| 682|Drosophila melanogaster CG31705-P... 28 1.8
AE014134-2076|AAF53106.2| 682|Drosophila melanogaster CG31705-P... 28 1.8
BT024454-1|ABC86516.1| 872|Drosophila melanogaster AT29264p pro... 27 5.4
BT023511-1|AAY84911.1| 671|Drosophila melanogaster LD05357p pro... 27 5.4
AY069190-1|AAL39335.1| 509|Drosophila melanogaster GH24215p pro... 27 5.4
AY052121-1|AAK93545.1| 1398|Drosophila melanogaster SD07366p pro... 27 5.4
AF276664-1|AAG29352.1| 671|Drosophila melanogaster comb gap pro... 27 5.4
AF276663-2|AAG29351.1| 375|Drosophila melanogaster comb gap spl... 27 5.4
AF276663-1|AAG29350.1| 671|Drosophila melanogaster comb gap pro... 27 5.4
AE014298-2167|AAF48467.2| 1208|Drosophila melanogaster CG33206-P... 27 5.4
AE014298-2166|AAF48466.2| 1398|Drosophila melanogaster CG33206-P... 27 5.4
AE014297-633|AAF53999.2| 1148|Drosophila melanogaster CG34127-PA... 27 5.4
AE013599-3270|AAM71014.1| 267|Drosophila melanogaster CG30398-P... 27 5.4
AE013599-1840|AAM70989.1| 629|Drosophila melanogaster CG8367-PC... 27 5.4
AE013599-1839|AAG22267.1| 671|Drosophila melanogaster CG8367-PD... 27 5.4
AE013599-1838|AAM70988.1| 671|Drosophila melanogaster CG8367-PA... 27 5.4
AE013599-1837|AAF58283.2| 772|Drosophila melanogaster CG8367-PB... 27 5.4
BT030107-1|ABN49246.1| 635|Drosophila melanogaster GH13974p pro... 26 7.1
BT009989-1|AAQ22458.1| 582|Drosophila melanogaster RE48393p pro... 26 7.1
BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p pro... 26 7.1
AE014298-528|AAN09095.1| 582|Drosophila melanogaster CG12206-PC... 26 7.1
AE014298-527|AAN09094.1| 582|Drosophila melanogaster CG12206-PB... 26 7.1
AE014298-526|AAF45872.2| 582|Drosophila melanogaster CG12206-PA... 26 7.1
AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA ... 26 7.1
>AY118790-1|AAM50650.1| 68|Drosophila melanogaster GH15688p
protein.
Length = 68
Score = 42.7 bits (96), Expect = 8e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -2
Query: 184 KNVAQQRNMSVICTPPRNKVSRGEMIFLAGLMVVGWSAIPAWVLVNIKHYR 32
++ Q R SV+ PP ++S E + L G M IPAWVL +I+ Y+
Sbjct: 15 RSAMQSRCQSVVSGPPTQRISTAEKVILGGGMCAASLFIPAWVLYHIRDYK 65
>AE014296-3570|AAF51742.1| 68|Drosophila melanogaster CG7181-PA
protein.
Length = 68
Score = 42.7 bits (96), Expect = 8e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -2
Query: 184 KNVAQQRNMSVICTPPRNKVSRGEMIFLAGLMVVGWSAIPAWVLVNIKHYR 32
++ Q R SV+ PP ++S E + L G M IPAWVL +I+ Y+
Sbjct: 15 RSAMQSRCQSVVSGPPTQRISTAEKVILGGGMCAASLFIPAWVLYHIRDYK 65
>AF181636-1|AAD55422.1| 682|Drosophila melanogaster BcDNA.GH07269
protein.
Length = 682
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 104 PRRPDGGGLVCYPSLGVGQHQALPRQAIKLSQ 9
P P GGG++C P G P + I+L Q
Sbjct: 537 PNAPPGGGIICVPVKVPGPDPKDPTKTIELDQ 568
>AE014134-2078|AAS64682.1| 682|Drosophila melanogaster CG31705-PC,
isoform C protein.
Length = 682
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 104 PRRPDGGGLVCYPSLGVGQHQALPRQAIKLSQ 9
P P GGG++C P G P + I+L Q
Sbjct: 537 PNAPPGGGIICVPVKVPGPDPKDPTKTIELDQ 568
>AE014134-2077|AAS64681.1| 682|Drosophila melanogaster CG31705-PB,
isoform B protein.
Length = 682
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 104 PRRPDGGGLVCYPSLGVGQHQALPRQAIKLSQ 9
P P GGG++C P G P + I+L Q
Sbjct: 537 PNAPPGGGIICVPVKVPGPDPKDPTKTIELDQ 568
>AE014134-2076|AAF53106.2| 682|Drosophila melanogaster CG31705-PA,
isoform A protein.
Length = 682
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 104 PRRPDGGGLVCYPSLGVGQHQALPRQAIKLSQ 9
P P GGG++C P G P + I+L Q
Sbjct: 537 PNAPPGGGIICVPVKVPGPDPKDPTKTIELDQ 568
>BT024454-1|ABC86516.1| 872|Drosophila melanogaster AT29264p
protein.
Length = 872
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 50 DQH-PGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLS 175
D H PG D+ PA HHQ ++D N+ S S + P +S
Sbjct: 510 DLHKPGGDNVPAAHHQLHDDDD-EDNNIPSDASVKPLNPPYIS 551
>BT023511-1|AAY84911.1| 671|Drosophila melanogaster LD05357p
protein.
Length = 671
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AY069190-1|AAL39335.1| 509|Drosophila melanogaster GH24215p
protein.
Length = 509
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 257 AHHHQAGQQTHPQTITVVS 275
>AY052121-1|AAK93545.1| 1398|Drosophila melanogaster SD07366p protein.
Length = 1398
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 41 LDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLS 175
L+ + P SRP G+ D +TS + + +A + H+P S
Sbjct: 1300 LEQESQPQAQSRPTLLSMTGQMDGVTSASATTSTAATSGHLPQAS 1344
>AF276664-1|AAG29352.1| 671|Drosophila melanogaster comb gap
protein.
Length = 671
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AF276663-2|AAG29351.1| 375|Drosophila melanogaster comb gap splice
variant cg14 protein.
Length = 375
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 117 AHHHQAGQQTHPQTITVVS 135
>AF276663-1|AAG29350.1| 671|Drosophila melanogaster comb gap
protein.
Length = 671
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AE014298-2167|AAF48467.2| 1208|Drosophila melanogaster CG33206-PB,
isoform B protein.
Length = 1208
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 41 LDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLS 175
L+ + P SRP G+ D +TS + + +A + H+P S
Sbjct: 1110 LEQESQPQAQSRPTLLSMTGQMDGVTSASATTSTAATSGHLPQAS 1154
>AE014298-2166|AAF48466.2| 1398|Drosophila melanogaster CG33206-PA,
isoform A protein.
Length = 1398
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 41 LDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLS 175
L+ + P SRP G+ D +TS + + +A + H+P S
Sbjct: 1300 LEQESQPQAQSRPTLLSMTGQMDGVTSASATTSTAATSGHLPQAS 1344
>AE014297-633|AAF53999.2| 1148|Drosophila melanogaster CG34127-PA
protein.
Length = 1148
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 50 DQH-PGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLS 175
D H PG D+ PA HHQ ++D N+ S S + P +S
Sbjct: 786 DLHKPGGDNVPAAHHQLHDDDD-EDNNIPSDASVKPLNPPYIS 827
>AE013599-3270|AAM71014.1| 267|Drosophila melanogaster CG30398-PA
protein.
Length = 267
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +2
Query: 68 DSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDILKDLVVSAK*IPNSKHFVLVQL 247
D H H + DH+T RS P L D +++ ++ + HF +
Sbjct: 77 DQVKGHLHTSRMLDHITIEQGARGRSYQRLFGPYLDDAVREAHLNEPHLTEPPHFRNLLN 136
Query: 248 FFEV 259
FFEV
Sbjct: 137 FFEV 140
>AE013599-1840|AAM70989.1| 629|Drosophila melanogaster CG8367-PC,
isoform C protein.
Length = 629
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 377 AHHHQAGQQTHPQTITVVS 395
>AE013599-1839|AAG22267.1| 671|Drosophila melanogaster CG8367-PD,
isoform D protein.
Length = 671
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AE013599-1838|AAM70988.1| 671|Drosophila melanogaster CG8367-PA,
isoform A protein.
Length = 671
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AE013599-1837|AAF58283.2| 772|Drosophila melanogaster CG8367-PB,
isoform B protein.
Length = 772
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 520 AHHHQAGQQTHPQTITVVS 538
>BT030107-1|ABN49246.1| 635|Drosophila melanogaster GH13974p
protein.
Length = 635
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 89 HQAGEEDHLTSGNLVSWRSADNAHVPLLSDILKDLVV 199
H G H +S NL+ SAD V L+++ K+ +V
Sbjct: 199 HGTGARRHCSSINLIKLDSADTDEVLALNELKKESLV 235
>BT009989-1|AAQ22458.1| 582|Drosophila melanogaster RE48393p
protein.
Length = 582
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 44 DVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPL 169
D++ HP +P E HL + L+ AD+ H PL
Sbjct: 227 DLENHPQQQQQPQQVRSPQLELHLQTTRLMVNEEADHKHSPL 268
>BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p
protein.
Length = 1000
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 2 YFFVIILLLVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDI 181
Y +I L++ +M D+D W + ++DH + N+++ S D L I
Sbjct: 301 YIVALIPLILHMMTDLDDDENWSTADV----VDDDDH-SDNNVIAESSLDRLACGLGGKI 355
Query: 182 LKDLVVSA 205
+ LV++A
Sbjct: 356 VLPLVMNA 363
>AE014298-528|AAN09095.1| 582|Drosophila melanogaster CG12206-PC,
isoform C protein.
Length = 582
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 44 DVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPL 169
D++ HP +P E HL + L+ AD+ H PL
Sbjct: 227 DLENHPQQQQQPQQVRSPQLELHLQTTRLMVNEEADHKHSPL 268
>AE014298-527|AAN09094.1| 582|Drosophila melanogaster CG12206-PB,
isoform B protein.
Length = 582
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 44 DVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPL 169
D++ HP +P E HL + L+ AD+ H PL
Sbjct: 227 DLENHPQQQQQPQQVRSPQLELHLQTTRLMVNEEADHKHSPL 268
>AE014298-526|AAF45872.2| 582|Drosophila melanogaster CG12206-PA,
isoform A protein.
Length = 582
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 44 DVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPL 169
D++ HP +P E HL + L+ AD+ H PL
Sbjct: 227 DLENHPQQQQQPQQVRSPQLELHLQTTRLMVNEEADHKHSPL 268
>AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA
protein.
Length = 1105
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 2 YFFVIILLLVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDI 181
Y +I L++ +M D+D W + ++DH + N+++ S D L I
Sbjct: 301 YIVALIPLILHMMTDLDDDENWSTADV----VDDDDH-SDNNVIAESSLDRLACGLGGKI 355
Query: 182 LKDLVVSA 205
+ LV++A
Sbjct: 356 VLPLVMNA 363
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,408
Number of Sequences: 53049
Number of extensions: 240615
Number of successful extensions: 921
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 506778984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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