Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c12
         (293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    32   0.082
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    30   0.25 
AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical ...    27   3.1  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    26   4.1  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    26   4.1  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    26   4.1  
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    25   7.1  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    25   9.4  
U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        25   9.4  

>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 31.9 bits (69), Expect = 0.082
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 189 IWLLARSKFLIPNILF*YNYSSKCSLKFFYVKLTI 293
           +W    SK+L+PN +F Y  SS C+  + +V L +
Sbjct: 35  LWDRTYSKYLLPNSIFLYKRSSTCTRTYIFVILRL 69


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 199 NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-IFLAGLM 89
           N + F+N+ Q+    V+  PP+N  S G + +F AG+M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609


>AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical
           protein B0205.13 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 56  HPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 166
           HP W+    HHHQ   + H  + N V+ ++A +  +P
Sbjct: 54  HPWWN----HHHQCWHQYHHRTENTVNSQNAPSQVIP 86


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 129 LFLGGVQITLMFLC*ATFLKIWLLA 203
           LFL G+Q+TL+F C   FL I  LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237


>Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical
           protein M04C9.1b protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 86  HHQAGEEDHLTSGNLVSWRSADN 154
           +HQ  E+ +L  GN VS  S DN
Sbjct: 100 YHQKDEKGYLPEGNKVSCESVDN 122


>Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical
           protein M04C9.1a protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 86  HHQAGEEDHLTSGNLVSWRSADN 154
           +HQ  E+ +L  GN VS  S DN
Sbjct: 115 YHQKDEKGYLPEGNKVSCESVDN 137


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 90  IRPARKIISPLETLFLGGVQITL 158
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 11  VRPSARLGAPSESLFVGGRVVTI 33


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 90  IRPARKIISPLETLFLGGVQITL 158
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 11  VRPSARLGAPSESLFVGGRVVTI 33


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 90  IRPARKIISPLETLFLGGVQITL 158
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 9   VRPSARLGAPSESLFVGGRVVTI 31


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 120 LETLFLGGVQITLMFLC*ATFLKIWLLARSKFLIPNILF 236
           + T  L G+Q  L+FLC A   +     +   +IP ILF
Sbjct: 91  ITTHLLLGIQYVLLFLCFARRHQAIAKIKQHHVIPEILF 129


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
           protein F43G9.6 protein.
          Length = 2034

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 82  GWSAIPAWVLVNIKH 38
           GW+A+  W+++N +H
Sbjct: 775 GWNAVGHWIVMNTRH 789


>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 211 LLRANNQIFKNVAQQRNMSVICTPPRNKVS 122
           +L++ ++IF+  A QRN  VI  PP +  S
Sbjct: 534 VLQSVDEIFEKDAGQRNALVIVRPPGHHAS 563


>U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical
           protein F41H10.6c protein.
          Length = 957

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 211 LLRANNQIFKNVAQQRNMSVICTPPRNKVS 122
           +L++ ++IF+  A QRN  VI  PP +  S
Sbjct: 536 VLQSVDEIFEKDAGQRNALVIVRPPGHHAS 565


>U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical
           protein F41H10.6b protein.
          Length = 955

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 211 LLRANNQIFKNVAQQRNMSVICTPPRNKVS 122
           +L++ ++IF+  A QRN  VI  PP +  S
Sbjct: 534 VLQSVDEIFEKDAGQRNALVIVRPPGHHAS 563


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 82  GWSAIPAWVLVNIKH 38
           GW+A+  W+++N +H
Sbjct: 775 GWNAVGHWIVMNTRH 789


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,755,391
Number of Sequences: 27780
Number of extensions: 123275
Number of successful extensions: 340
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)