Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c12
         (293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   1.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   1.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   7.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   7.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   7.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   7.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   7.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   9.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   9.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 104 PRRPDGGGLVCYPSLGVGQHQALPRQAIKLSQKN 3
           PRR +   L C P L  GQ Q+ P+   +  + N
Sbjct: 341 PRRKNNCPLHCKPEL--GQSQSSPKFVARREESN 372


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 77  VCYPSLGVGQHQALPRQAIKLSQKN 3
           +C P L +    A  +QA+++S  N
Sbjct: 429 ICKPKLKIADLSAHDKQAVRMSALN 453


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 125 NLVSWRSADNAHVPLLSDILKDLVVSA 205
           N+    SAD+  V +++   +D +VSA
Sbjct: 375 NISPRSSADSCQVGIMAQRHRDTIVSA 401


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 79  WSAIPAWVLVNI 44
           W+A+PA V++ +
Sbjct: 326 WNAVPARVMIGV 337


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 79  WSAIPAWVLVNI 44
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 79  WSAIPAWVLVNI 44
           W+A+PA V++ +
Sbjct: 346 WNAVPARVMIGV 357


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 79  WSAIPAWVLVNI 44
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 68  DSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLL 172
           D RP   HQ       T G++   R   +   PLL
Sbjct: 112 DERPNSIHQRASFSLNTDGDIAGLRKKKHKVNPLL 146


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 6/21 (28%), Positives = 9/21 (42%)
 Frame = +2

Query: 53  QHPGWDSRPAHHHQAGEEDHL 115
           QHP    +   H    ++ HL
Sbjct: 175 QHPHMQPQQGQHQSQAQQQHL 195


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 28   CRGNA*C*PTPRLG 69
            C  N  C P PR+G
Sbjct: 1695 CAPNRRCPPPPRMG 1708


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 293 DCQFYIKKFET 261
           DC F +K F+T
Sbjct: 424 DCDFVVKLFKT 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,408
Number of Sequences: 438
Number of extensions: 1485
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)