Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c11
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   2.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = +1

Query: 124 GLPLTFRGMKNRC-----WPILIDTG*AQKISSKSVKPFRRSMATKTVTREFYILDSIRN 288
           GLP TFR  KN       +PI +  G    I  KS K    S  T    R F  LD  R 
Sbjct: 513 GLPFTFREQKNLMIELDKFPITLQPG-KNTIEQKSTK----SSVTIPFERTFRNLDENRP 567

Query: 289 IIG 297
           I G
Sbjct: 568 IGG 570


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 800 RYQHLRTYNK---FYPNNTNLIDFTNWI 726
           R Q L ++ +   FYPNN ++  F N++
Sbjct: 295 RLQLLESFKRKVNFYPNNQDIEKFLNYL 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,534
Number of Sequences: 438
Number of extensions: 3938
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)