Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c10
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...   198   1e-51
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    96   6e-21
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    33   0.062
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.77 
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   4.1  

>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score =  198 bits (482), Expect = 1e-51
 Identities = 91/133 (68%), Positives = 110/133 (82%)
 Frame = -2

Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
           S+AVATPKGLV PVIRN ++M+  +IE  IA L  KAR GKL IE+M  GTFTISNGG+F
Sbjct: 318 SIAVATPKGLVTPVIRNAESMSLLEIESAIATLGSKARAGKLAIEDMASGTFTISNGGIF 377

Query: 614 GSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLR 435
           GSL GTPIIN PQ+A+LG+H I ERP+ +NGQVV RPMMY+ALTYDHR++DGREAV FLR
Sbjct: 378 GSLYGTPIINLPQTAVLGLHAIKERPVVINGQVVPRPMMYLALTYDHRMVDGREAVTFLR 437

Query: 434 KIKEGVEDPATIV 396
            +KE +EDPA ++
Sbjct: 438 LVKEYIEDPAKML 450


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
 Frame = -2

Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
           S+AVATP GL+ PVIRN   +  A+I        ++AR  KL  EE  GGTFTISN G+F
Sbjct: 347 SMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGMF 406

Query: 614 GSLMGTPIINPPQSAILGMHGIFERPI---ALNGQVVIRPMMYIALTYDHRLIDGREAVL 444
                T IINPPQ+ IL +    +  +          + P+M   L+ DHR++DG  A  
Sbjct: 407 PVDQFTAIINPPQACILAVGTTVDTVVPDSTSEKGFKVAPIMKCTLSSDHRVVDGAMAAR 466

Query: 443 FLRKIKEGVEDPATIV 396
           F   +K+ +E+P  I+
Sbjct: 467 FTTALKKILENPLEIM 482


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 657 NGRRNVHHQQWRRFRVSDGNANHQSASICYTGYARHLRAAHRSERP 520
           NG+ +VH        VS+G+ NH  +S+  +G  + L  A +S++P
Sbjct: 51  NGKPSVHDSVGSDASVSNGHNNHNESSLWTSGIPKALEEATKSKKP 96


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 21/90 (23%), Positives = 38/90 (42%)
 Frame = +3

Query: 435 SEEEYSFAAVYQPVVVS*GNIHHGPDHDLAVQSDGPLEDAVHTQYSRLRRIDDWRSHQRP 614
           S + Y  A    P+  +  +    P+ D +  S  PL    HT+ ++   ++D R     
Sbjct: 62  SVDPYVDANPLDPLAAAKASFADFPEQDDSQSSTSPLSSKYHTKKNKQIFVEDSRRGGAA 121

Query: 615 ENAAIADGERSAVHFFDRELTGSRFFR*PS 704
            NAA    ++S   +++R  T  R    P+
Sbjct: 122 SNAAAIAAKKSG--YYERTSTRKRSLTVPT 149


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 515 VIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVE 414
           V+     +   YDH L DG    LF + + EG++
Sbjct: 112 VLNDKSELVFIYDHSLFDGGSGPLFHKYVLEGLQ 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,448
Number of Sequences: 5004
Number of extensions: 54203
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)