Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c10
(795 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003564-1|AAO39568.1| 468|Drosophila melanogaster LP03989p pro... 239 3e-63
AY089515-1|AAL90253.1| 468|Drosophila melanogaster GM01350p pro... 239 3e-63
AE014297-1281|AAF54625.1| 468|Drosophila melanogaster CG5214-PA... 239 3e-63
BT024948-1|ABE01178.1| 224|Drosophila melanogaster IP16013p pro... 93 4e-19
BT023873-1|AAZ86794.1| 512|Drosophila melanogaster AT21758p pro... 93 4e-19
AE014134-1275|AAF52515.1| 421|Drosophila melanogaster CG5261-PA... 93 4e-19
AE014134-1274|AAF52514.1| 512|Drosophila melanogaster CG5261-PB... 93 4e-19
AY061469-1|AAL29017.1| 462|Drosophila melanogaster LD43554p pro... 82 1e-15
AE014298-2103|AAF48423.1| 462|Drosophila melanogaster CG5599-PA... 82 1e-15
AY069568-1|AAL39713.1| 513|Drosophila melanogaster LD29830p pro... 35 0.11
AE014134-1720|AAF52825.1| 513|Drosophila melanogaster CG4602-PA... 35 0.11
AF055719-1|AAC32822.3| 513|Drosophila melanogaster splicing fac... 34 0.26
AY052030-1|AAK93454.1| 1422|Drosophila melanogaster LD47893p pro... 31 2.4
AF104401-1|AAF14115.1| 1827|Drosophila melanogaster SPT6 protein... 31 2.4
AF104400-1|AAF14114.1| 1831|Drosophila melanogaster SPT6 protein... 31 2.4
AE014298-861|AAF46140.1| 1831|Drosophila melanogaster CG12225-PA... 31 2.4
BT023755-1|AAZ41763.1| 974|Drosophila melanogaster RE58921p pro... 29 7.3
AE014298-2125|AAX52496.1| 974|Drosophila melanogaster CG6146-PC... 29 7.3
AE014298-2124|AAF48440.1| 974|Drosophila melanogaster CG6146-PA... 29 7.3
>BT003564-1|AAO39568.1| 468|Drosophila melanogaster LP03989p
protein.
Length = 468
Score = 239 bits (585), Expect = 3e-63
Identities = 113/136 (83%), Positives = 125/136 (91%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAVATP+GLVVPVIRNV+ M YADIE+ +AGLA+KAR +T+E+MDGGTFTISNGGVF
Sbjct: 333 SVAVATPRGLVVPVIRNVEGMNYADIEIALAGLADKARRDAITVEDMDGGTFTISNGGVF 392
Query: 614 GSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLR 435
GSLMGTPIINPPQSAILGMHGIFERPIA+ G+V IRPMMYIALTYDHR+IDGREAVLFLR
Sbjct: 393 GSLMGTPIINPPQSAILGMHGIFERPIAVKGEVKIRPMMYIALTYDHRIIDGREAVLFLR 452
Query: 434 KIKEGVEDPATIVAGL 387
KIK VE+PA IVAGL
Sbjct: 453 KIKAAVENPAIIVAGL 468
>AY089515-1|AAL90253.1| 468|Drosophila melanogaster GM01350p
protein.
Length = 468
Score = 239 bits (585), Expect = 3e-63
Identities = 113/136 (83%), Positives = 125/136 (91%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAVATP+GLVVPVIRNV+ M YADIE+ +AGLA+KAR +T+E+MDGGTFTISNGGVF
Sbjct: 333 SVAVATPRGLVVPVIRNVEGMNYADIEIALAGLADKARRDAITVEDMDGGTFTISNGGVF 392
Query: 614 GSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLR 435
GSLMGTPIINPPQSAILGMHGIFERPIA+ G+V IRPMMYIALTYDHR+IDGREAVLFLR
Sbjct: 393 GSLMGTPIINPPQSAILGMHGIFERPIAVKGEVKIRPMMYIALTYDHRIIDGREAVLFLR 452
Query: 434 KIKEGVEDPATIVAGL 387
KIK VE+PA IVAGL
Sbjct: 453 KIKAAVENPAIIVAGL 468
>AE014297-1281|AAF54625.1| 468|Drosophila melanogaster CG5214-PA
protein.
Length = 468
Score = 239 bits (585), Expect = 3e-63
Identities = 113/136 (83%), Positives = 125/136 (91%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAVATP+GLVVPVIRNV+ M YADIE+ +AGLA+KAR +T+E+MDGGTFTISNGGVF
Sbjct: 333 SVAVATPRGLVVPVIRNVEGMNYADIEIALAGLADKARRDAITVEDMDGGTFTISNGGVF 392
Query: 614 GSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLR 435
GSLMGTPIINPPQSAILGMHGIFERPIA+ G+V IRPMMYIALTYDHR+IDGREAVLFLR
Sbjct: 393 GSLMGTPIINPPQSAILGMHGIFERPIAVKGEVKIRPMMYIALTYDHRIIDGREAVLFLR 452
Query: 434 KIKEGVEDPATIVAGL 387
KIK VE+PA IVAGL
Sbjct: 453 KIKAAVENPAIIVAGL 468
>BT024948-1|ABE01178.1| 224|Drosophila melanogaster IP16013p
protein.
Length = 224
Score = 93.1 bits (221), Expect = 4e-19
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAV+T KGL+ P++ N +I + LA KAR KL E GGT ++SN G+F
Sbjct: 88 SVAVSTDKGLITPIVFNADRKGVLEISKDVKALAAKARDNKLQPHEFQGGTISVSNLGMF 147
Query: 614 GSLMGTPIINPPQSAILGM----HGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAV 447
G +INPPQS IL + + P +L G + M+ + L+ DHR++DG A
Sbjct: 148 GVNQFAAVINPPQSCILAIGTTTKQLVADPDSLKGFKEVN-MLTVTLSADHRVVDGAVAA 206
Query: 446 LFLRKIKEGVEDPATIV 396
+L+ ++ +EDP+ +V
Sbjct: 207 RWLQHFRDYMEDPSNMV 223
>BT023873-1|AAZ86794.1| 512|Drosophila melanogaster AT21758p
protein.
Length = 512
Score = 93.1 bits (221), Expect = 4e-19
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAV+T KGL+ P++ N +I + LA KAR KL E GGT ++SN G+F
Sbjct: 376 SVAVSTDKGLITPIVFNADRKGVLEISKDVKALAAKARDNKLQPHEFQGGTISVSNLGMF 435
Query: 614 GSLMGTPIINPPQSAILGM----HGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAV 447
G +INPPQS IL + + P +L G + M+ + L+ DHR++DG A
Sbjct: 436 GVNQFAAVINPPQSCILAIGTTTKQLVADPDSLKGFKEVN-MLTVTLSADHRVVDGAVAA 494
Query: 446 LFLRKIKEGVEDPATIV 396
+L+ ++ +EDP+ +V
Sbjct: 495 RWLQHFRDYMEDPSNMV 511
>AE014134-1275|AAF52515.1| 421|Drosophila melanogaster CG5261-PA,
isoform A protein.
Length = 421
Score = 93.1 bits (221), Expect = 4e-19
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAV+T KGL+ P++ N +I + LA KAR KL E GGT ++SN G+F
Sbjct: 285 SVAVSTDKGLITPIVFNADRKGVLEISKDVKALAAKARDNKLQPHEFQGGTISVSNLGMF 344
Query: 614 GSLMGTPIINPPQSAILGM----HGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAV 447
G +INPPQS IL + + P +L G + M+ + L+ DHR++DG A
Sbjct: 345 GVNQFAAVINPPQSCILAIGTTTKQLVADPDSLKGFKEVN-MLTVTLSADHRVVDGAVAA 403
Query: 446 LFLRKIKEGVEDPATIV 396
+L+ ++ +EDP+ +V
Sbjct: 404 RWLQHFRDYMEDPSNMV 420
>AE014134-1274|AAF52514.1| 512|Drosophila melanogaster CG5261-PB,
isoform B protein.
Length = 512
Score = 93.1 bits (221), Expect = 4e-19
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAV+T KGL+ P++ N +I + LA KAR KL E GGT ++SN G+F
Sbjct: 376 SVAVSTDKGLITPIVFNADRKGVLEISKDVKALAAKARDNKLQPHEFQGGTISVSNLGMF 435
Query: 614 GSLMGTPIINPPQSAILGM----HGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAV 447
G +INPPQS IL + + P +L G + M+ + L+ DHR++DG A
Sbjct: 436 GVNQFAAVINPPQSCILAIGTTTKQLVADPDSLKGFKEVN-MLTVTLSADHRVVDGAVAA 494
Query: 446 LFLRKIKEGVEDPATIV 396
+L+ ++ +EDP+ +V
Sbjct: 495 RWLQHFRDYMEDPSNMV 511
>AY061469-1|AAL29017.1| 462|Drosophila melanogaster LD43554p
protein.
Length = 462
Score = 81.8 bits (193), Expect = 1e-15
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVA+ TP+GLVVP I+N Q T +I + L E+ RTG L+ + GTF++SN GV
Sbjct: 327 SVAIDTPQGLVVPNIKNCQTKTIIEIAKDLNALVERGRTGSLSPADFADGTFSLSNIGVI 386
Query: 614 GSLMGTPIINPPQSAILGMHGIFERPIALN--GQVVIRPMMYIALTYDHRLIDGREAVLF 441
G P I PQ AI G G + N +VV +M ++ + DHR+IDG F
Sbjct: 387 GGTYTHPCIMAPQVAI-GAMGRTKAVPRFNDKDEVVKAYVMSVSWSADHRVIDGVTMASF 445
Query: 440 LRKIKEGVEDPA 405
K+ +E+PA
Sbjct: 446 SNVWKQYLENPA 457
>AE014298-2103|AAF48423.1| 462|Drosophila melanogaster CG5599-PA
protein.
Length = 462
Score = 81.8 bits (193), Expect = 1e-15
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVA+ TP+GLVVP I+N Q T +I + L E+ RTG L+ + GTF++SN GV
Sbjct: 327 SVAIDTPQGLVVPNIKNCQTKTIIEIAKDLNALVERGRTGSLSPADFADGTFSLSNIGVI 386
Query: 614 GSLMGTPIINPPQSAILGMHGIFERPIALN--GQVVIRPMMYIALTYDHRLIDGREAVLF 441
G P I PQ AI G G + N +VV +M ++ + DHR+IDG F
Sbjct: 387 GGTYTHPCIMAPQVAI-GAMGRTKAVPRFNDKDEVVKAYVMSVSWSADHRVIDGVTMASF 445
Query: 440 LRKIKEGVEDPA 405
K+ +E+PA
Sbjct: 446 SNVWKQYLENPA 457
>AY069568-1|AAL39713.1| 513|Drosophila melanogaster LD29830p
protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.11
Identities = 27/103 (26%), Positives = 42/103 (40%)
Frame = -1
Query: 786 GRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQWRRFRVS 607
G+H+ RSR + RS H R+ S + G +R + R R+ H + R R S
Sbjct: 333 GKHSSRSR--SKRSRSRHRRSSSRSRRSRSRGGKHSRSSRSRGKRSRSRHRRSTSRSRSS 390
Query: 606 DGNANHQSASICYTGYARHLRAAHRSERPSRDQAHDVYCPNLR 478
+ S G + R+ RS++ R + H P R
Sbjct: 391 RSHGTGGGGS----GNGKRSRSRERSKKSHRSEKHSSRSPRSR 429
>AE014134-1720|AAF52825.1| 513|Drosophila melanogaster CG4602-PA
protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.11
Identities = 27/103 (26%), Positives = 42/103 (40%)
Frame = -1
Query: 786 GRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQWRRFRVS 607
G+H+ RSR + RS H R+ S + G +R + R R+ H + R R S
Sbjct: 333 GKHSSRSR--SKRSRSRHRRSSSRSRRSRSRGGKHSRSSRSRGKRSRSRHRRSTSRSRSS 390
Query: 606 DGNANHQSASICYTGYARHLRAAHRSERPSRDQAHDVYCPNLR 478
+ S G + R+ RS++ R + H P R
Sbjct: 391 RSHGTGGGGS----GNGKRSRSRERSKKSHRSEKHSSRSPRSR 429
>AF055719-1|AAC32822.3| 513|Drosophila melanogaster splicing factor
SRp54 protein.
Length = 513
Score = 33.9 bits (74), Expect = 0.26
Identities = 26/103 (25%), Positives = 42/103 (40%)
Frame = -1
Query: 786 GRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQWRRFRVS 607
G+H+ RSR + RS H R+ S + G +R + R R+ H + R R S
Sbjct: 333 GKHSSRSR--SKRSRSRHRRSSSRSRRSRSRGGKHSRSSRSRGKRSRSRHRRSTSRSRSS 390
Query: 606 DGNANHQSASICYTGYARHLRAAHRSERPSRDQAHDVYCPNLR 478
+ S G + R+ R+++ R + H P R
Sbjct: 391 RSHGTGGGGS----GNGKRSRSRERTKKSHRSEKHSSRSPRSR 429
>AY052030-1|AAK93454.1| 1422|Drosophila melanogaster LD47893p protein.
Length = 1422
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -1
Query: 792 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQ 628
G G S + HQ+R++ +L A+ +WA + + +H + ++ HH Q
Sbjct: 1290 GGGGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQ 1344
>AF104401-1|AAF14115.1| 1827|Drosophila melanogaster SPT6 protein
protein.
Length = 1827
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -1
Query: 792 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQ 628
G G S + HQ+R++ +L A+ +WA + + +H + ++ HH Q
Sbjct: 1695 GGGGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQ 1749
>AF104400-1|AAF14114.1| 1831|Drosophila melanogaster SPT6 protein
protein.
Length = 1831
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -1
Query: 792 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQ 628
G G S + HQ+R++ +L A+ +WA + + +H + ++ HH Q
Sbjct: 1699 GGGGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQ 1753
>AE014298-861|AAF46140.1| 1831|Drosophila melanogaster CG12225-PA
protein.
Length = 1831
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -1
Query: 792 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQ 628
G G S + HQ+R++ +L A+ +WA + + +H + ++ HH Q
Sbjct: 1699 GGGGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQ 1753
>BT023755-1|AAZ41763.1| 974|Drosophila melanogaster RE58921p
protein.
Length = 974
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 711 HHSWASGKSENR*AHDRRNGRRNVHHQQWRRFRVSD-GNANHQSASICYTGYARHLRAAH 535
HH +S E R R + H+ R + +++H+S+S + ++H + H
Sbjct: 135 HHKRSSKDKERRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRH 194
Query: 534 RSERPSRDQ 508
S S+DQ
Sbjct: 195 SSSSSSKDQ 203
>AE014298-2125|AAX52496.1| 974|Drosophila melanogaster CG6146-PC,
isoform C protein.
Length = 974
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 711 HHSWASGKSENR*AHDRRNGRRNVHHQQWRRFRVSD-GNANHQSASICYTGYARHLRAAH 535
HH +S E R R + H+ R + +++H+S+S + ++H + H
Sbjct: 135 HHKRSSKDKERRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRH 194
Query: 534 RSERPSRDQ 508
S S+DQ
Sbjct: 195 SSSSSSKDQ 203
>AE014298-2124|AAF48440.1| 974|Drosophila melanogaster CG6146-PA,
isoform A protein.
Length = 974
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 711 HHSWASGKSENR*AHDRRNGRRNVHHQQWRRFRVSD-GNANHQSASICYTGYARHLRAAH 535
HH +S E R R + H+ R + +++H+S+S + ++H + H
Sbjct: 135 HHKRSSKDKERRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRH 194
Query: 534 RSERPSRDQ 508
S S+DQ
Sbjct: 195 SSSSSSKDQ 203
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,480,853
Number of Sequences: 53049
Number of extensions: 638985
Number of successful extensions: 2116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3695805360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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