Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c10
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical ... 209 2e-54
Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical pr... 106 2e-23
Z81044-2|CAB02813.1| 337|Caenorhabditis elegans Hypothetical pr... 96 2e-20
Z37093-3|CAA85465.1| 448|Caenorhabditis elegans Hypothetical pr... 71 1e-12
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 29 5.1
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 28 8.9
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 28 8.9
AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like nucl... 28 8.9
AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical ... 28 8.9
>AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical
protein W02F12.5 protein.
Length = 463
Score = 209 bits (510), Expect = 2e-54
Identities = 98/136 (72%), Positives = 114/136 (83%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAVATPKGLVVPV+RNV++M YA IEL +A L KAR GKL +E+M+GGTFTISNGGVF
Sbjct: 328 SVAVATPKGLVVPVLRNVESMNYAQIELELANLGVKARDGKLAVEDMEGGTFTISNGGVF 387
Query: 614 GSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLR 435
GS+ GTPIINPPQSAILGMHG+F+R + +NG+ IRP+M IALTYDHRLIDGREAV FL+
Sbjct: 388 GSMFGTPIINPPQSAILGMHGVFDRVVPVNGKPEIRPIMQIALTYDHRLIDGREAVTFLK 447
Query: 434 KIKEGVEDPATIVAGL 387
KIK VEDP + L
Sbjct: 448 KIKTAVEDPRIMFMNL 463
>Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical
protein F23B12.5 protein.
Length = 507
Score = 106 bits (254), Expect = 2e-23
Identities = 61/136 (44%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAV+TP GL+ P+I N A I I LA++AR GKL E GGTFT+SN G+F
Sbjct: 372 SVAVSTPAGLITPIIFNAHAKGLATIASEIVELAQRAREGKLQPHEFQGGTFTVSNLGMF 431
Query: 614 GSLMG-TPIINPPQSAILGMHGIFER--PIALNGQVVIRPMMYIALTYDHRLIDGREAVL 444
GS+ T IINPPQS IL + G ++ P G I+ M + L+ DHR +DG +
Sbjct: 432 GSVSDFTAIINPPQSCILAIGGASDKLVPDEAEGYKKIKTMK-VTLSCDHRTVDGAVGAV 490
Query: 443 FLRKIKEGVEDPATIV 396
+LR KE +E P T++
Sbjct: 491 WLRHFKEFLEKPHTML 506
>Z81044-2|CAB02813.1| 337|Caenorhabditis elegans Hypothetical
protein C30H6.7 protein.
Length = 337
Score = 96.3 bits (229), Expect = 2e-20
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Frame = -2
Query: 794 SVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVF 615
SVAVATP GL+ P++ N + I + L+ AR KL ++ GG+FTISN G+F
Sbjct: 188 SVAVATPTGLITPIVENSDILGVLAISSKVKELSGLARESKLKPQQFQGGSFTISNLGMF 247
Query: 614 GSLMG-TPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFL 438
GS+ T IINPPQ AIL + G ++++GQ+ + +M + L +D R I A FL
Sbjct: 248 GSVTNFTAIINPPQCAILTIGGTRSEVVSVDGQLETQKLMGVNLCFDGRAISEECAKRFL 307
Query: 437 RKIKEGVEDPATIVA 393
E + DP ++A
Sbjct: 308 LHFSESLSDPELLIA 322
>Z37093-3|CAA85465.1| 448|Caenorhabditis elegans Hypothetical
protein ZK669.4 protein.
Length = 448
Score = 70.5 bits (165), Expect = 1e-12
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 791 VAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFG 612
+A+ TP GLVVP I+N + + +I + L E + ++ E++ GTF++SN G G
Sbjct: 312 LAMDTPGGLVVPNIKNCEQRSIFEIAQELNRLLEAGKKQQIKREDLIDGTFSLSNIGNIG 371
Query: 611 SLMGTPIINPPQSAILGMHGIFERP-IALNGQVVIRPMMYIALTYDHRLIDGREAVLFLR 435
+P++ PPQ AI + I + P + V+ +M ++ DHR++DG F
Sbjct: 372 GTYASPVVFPPQVAIGAIGKIEKLPRFDKHDNVIPVNIMKVSWCADHRVVDGATMARFSN 431
Query: 434 KIKEGVEDPATIVAGL 387
+ K +E P+ ++A L
Sbjct: 432 RWKFYLEHPSAMLAQL 447
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 507 PDHDLAVQSDGPLEDAVHTQYSRLRRIDDWRSHQRPENAAIADGERSAVHF 659
P + +Q+DGP E+ V Y +L + S PE + +G R + F
Sbjct: 10 PQLEEFLQNDGPTEEEVRVWYDKLAEYEIEGSESPPEIELLYNGARYLMGF 60
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 451 ASRPSISLWS*VRAIYIMG----LITTWPFRAMGRSKMPC 558
AS +IS+W IY++G LI F +MGRSK C
Sbjct: 429 ASLNAISIWQLFTYIYVIGIVIELIIITLFASMGRSKTCC 468
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 758 PVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSL 606
P+ +V N+ + + G+A + + + E G TF+++ G + SL
Sbjct: 496 PITSSVTNLNKSGLRAPATGIANDVESARKLMREKLGPTFSLNKGDISFSL 546
>AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 568
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 158 GYVLFVLFIVIFSN 117
GYV FV+F+V+FSN
Sbjct: 146 GYVFFVIFMVVFSN 159
>AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical
protein F27E11.1 protein.
Length = 568
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 158 GYVLFVLFIVIFSN 117
GYV FV+F+V+FSN
Sbjct: 146 GYVFFVIFMVVFSN 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,542
Number of Sequences: 27780
Number of extensions: 311483
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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