Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c08
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch...    25   8.6  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   8.6  

>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 622 DPVEAARGVGGACWKRAC 675
           DP+E    +G A W +AC
Sbjct: 167 DPIETISSIGQASWGKAC 184


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 311 NQTKHYSNRIIVPLTAAVVVFARIQQVYREARRPQRG---PQGCRE*D 445
           N+     +  + P T A+   AR+    REAR  +RG   PQ  RE D
Sbjct: 276 NRDTSLKSHFVEPRTQALRPGARLTYKLREARSSKRGESTPQSFREED 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,836
Number of Sequences: 5004
Number of extensions: 43392
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)