Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c08
         (743 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118738-1|AAM50598.1|   87|Drosophila melanogaster GH04760p pro...    29   5.1  
AL009193-3|CAA15694.2|  991|Drosophila melanogaster EG:103B4.4 p...    29   5.1  
AE014296-2342|AAF49773.3| 3146|Drosophila melanogaster CG9007-PA...    29   8.8  

>AY118738-1|AAM50598.1|   87|Drosophila melanogaster GH04760p
           protein.
          Length = 87

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 304 HVESNETLFQQNNCSVNGG-GCCVRTNTTSVPGGSSAST 417
           H+++       + C+ +GG GCC RT+++    G S +T
Sbjct: 2   HLQNQNACNLPHRCARHGGSGCCPRTSSSRTSAGRSGTT 40


>AL009193-3|CAA15694.2|  991|Drosophila melanogaster EG:103B4.4
           protein.
          Length = 991

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 503 ITIRYPHCTATCSARSCPLNLTPCILEVRVEADEPPGTLVVFVRTQQPPP 354
           I++ +P    +C+  S    L P +  VR  +D PP  + +    Q PPP
Sbjct: 491 ISLLFPRSPPSCAETSSLAEL-PRVALVRRSSDRPPTAVAMSTAAQCPPP 539


>AE014296-2342|AAF49773.3| 3146|Drosophila melanogaster CG9007-PA
           protein.
          Length = 3146

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 473 TCSARSCPLNLTPCILEVRVEADEPPGTLVVFVRTQQPPPLTEQ 342
           T    + PL+LTP  + V VEA  PP +  +   + QPP   +Q
Sbjct: 657 TTPTPATPLHLTPVNVPVHVEA-APPSSPALVKGSSQPPAQPQQ 699


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,150,822
Number of Sequences: 53049
Number of extensions: 526336
Number of successful extensions: 1818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1818
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)