Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c07
         (854 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003080-1|AAH03080.1|  173|Homo sapiens HSPC171 protein protein.     119   1e-26
BC013412-1|AAH13412.1|  173|Homo sapiens HSPC171 protein protein.     118   3e-26
BC021109-1|AAH21109.1|  100|Homo sapiens HSPC171 protein protein.      63   1e-09
AB065553-1|BAC05794.1|  302|Homo sapiens seven transmembrane hel...    30   9.3  
AB065485-1|BAC05738.1|  274|Homo sapiens seven transmembrane hel...    30   9.3  

>BC003080-1|AAH03080.1|  173|Homo sapiens HSPC171 protein protein.
          Length = 173

 Score =  119 bits (287), Expect = 1e-26
 Identities = 52/133 (39%), Positives = 81/133 (60%)
 Frame = -2

Query: 685 QILVENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIHIACYQLMMY 506
           QI  EN  T+KFY  + + A + Y ++T +F+Y + S W        L ++ A Y  M  
Sbjct: 14  QIFEENRETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWLALGFSLAVYGASYHSMSS 73

Query: 505 ISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILPIRV 326
           +++  +  +  L+D G+DLNME GM EH+KD+++L++I QVL+  + Y W   L+ P R 
Sbjct: 74  MARAAFSEDGALMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYVWSFWLLAPGRA 133

Query: 325 FWLLWTNILGPWF 287
            +LLW N+LGPWF
Sbjct: 134 LYLLWVNVLGPWF 146


>BC013412-1|AAH13412.1|  173|Homo sapiens HSPC171 protein protein.
          Length = 173

 Score =  118 bits (284), Expect = 3e-26
 Identities = 52/133 (39%), Positives = 80/133 (60%)
 Frame = -2

Query: 685 QILVENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIHIACYQLMMY 506
           QI  EN  T+KFY  + + A + Y ++T +F+Y + S W        L ++ A Y  M  
Sbjct: 14  QIFEENRETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWLALGFSLAVYGASYHSMSS 73

Query: 505 ISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILPIRV 326
           +++  +     L+D G+DLNME GM EH+KD+++L++I QVL+  + Y W   L+ P R 
Sbjct: 74  MARAAFSEYGALMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYVWSFWLLAPGRA 133

Query: 325 FWLLWTNILGPWF 287
            +LLW N+LGPWF
Sbjct: 134 LYLLWVNVLGPWF 146


>BC021109-1|AAH21109.1|  100|Homo sapiens HSPC171 protein protein.
          Length = 100

 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 30/87 (34%), Positives = 48/87 (55%)
 Frame = -2

Query: 685 QILVENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIHIACYQLMMY 506
           QI  EN  T+KFY  + + A + Y ++T +F+Y + S W        L ++ A Y  M  
Sbjct: 14  QIFEENRETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWLALGFSLAVYGASYHSMSS 73

Query: 505 ISKPRYLNNTQLLDPGLDLNMEGGMGE 425
           +++  +  +  L+D G+DLNME GM E
Sbjct: 74  MARAAFSEDGALMDGGMDLNMEQGMAE 100


>AB065553-1|BAC05794.1|  302|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 302

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -1

Query: 224 IQTESFAVIH---LSHMCMSISVFIIA*MLILYSEQ*YFAI*CNNIHIFILVNSH*MMML 54
           +Q+ S  + H   L+ M   +    I  ML+       F   C  +H  ++VN H  +  
Sbjct: 110 MQSHSRVISHVGCLTQMSFLVLFACIEGMLLTVMAYGCFVAICRPLHYPVIVNPHLCVFF 169

Query: 53  VLPTFFLN 30
           VL +FFLN
Sbjct: 170 VLVSFFLN 177


>AB065485-1|BAC05738.1|  274|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 9.3
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -1

Query: 224 IQTESFAVIH---LSHMCMSISVFIIA*MLILYSEQ*YFAI*CNNIHIFILVNSH*MMML 54
           +Q+ S  + H   L+ M   +    I  ML+       F   C  +H  ++VN H  +  
Sbjct: 82  MQSHSRVISHVGCLTQMSFLVLFACIEGMLLTVMAYGCFVAICRPLHYPVIVNPHLCVFF 141

Query: 53  VLPTFFLN 30
           VL +FFLN
Sbjct: 142 VLVSFFLN 149


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,926,886
Number of Sequences: 237096
Number of extensions: 2532176
Number of successful extensions: 11085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11082
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)