Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c07
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-4|CAA99892.2|  169|Caenorhabditis elegans Hypothetical pr...    61   1e-09
Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical p...    29   5.6  
AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z75546-4|CAA99892.2|  169|Caenorhabditis elegans Hypothetical
           protein R05D11.5 protein.
          Length = 169

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 41/132 (31%), Positives = 63/132 (47%)
 Frame = -2

Query: 685 QILVENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIHIACYQLMMY 506
           +I  EN  TV  Y   S  + + Y   + +F  +  S   +FF V  L+  I     M  
Sbjct: 11  EIYEENQKTVTTYSVASTISMAIY-YSSCMFLSQCSSTDYVFFAVSALV-QIFAILFMKS 68

Query: 505 ISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILPIRV 326
           ++K +  +   +LD G DLN     GE+ KD +IL+ I Q+++L + Y +LLLL  P   
Sbjct: 69  LAKAKLDDKGHVLDAGADLNDPEAFGEYCKDAIILTVIIQIISLYSTYGFLLLLAFPGAA 128

Query: 325 FWLLWTNILGPW 290
            +      L PW
Sbjct: 129 TYKFVAGFLLPW 140


>Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical
           protein T19C9.2 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 544 LIIHIACYQLMMYISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINN 365
           +I H+AC    +Y++ PR L+ T   D  + L            ++I  ++T +LA    
Sbjct: 223 IIFHVACLVYYLYVAPPRTLSQTTRRDQKIFLVCVTAQTSVPLLVIIAPAMTVLLASWAG 282

Query: 364 YF 359
           Y+
Sbjct: 283 YY 284


>Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical
           protein C08B6.13 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 661 TVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLII-HIACYQLMMYISKPRYL 485
           T+++     MAA  F  II   F     S  V FF V + I+  I  + L++    PR+ 
Sbjct: 89  TIRYIMTFLMAANRFVCIINPRFSKFFDSETVTFFGVGIWILAFIGSWYLLLLGCFPRFD 148

Query: 484 NNTQLLD 464
           + T +LD
Sbjct: 149 SETFVLD 155


>AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical
           protein Y73E7A.3 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/56 (19%), Positives = 30/56 (53%)
 Frame = -2

Query: 682 ILVENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIHIACYQL 515
           ++++  + + F  N+S     FY ++  +F +++  +++ F + +V II    Y +
Sbjct: 302 VVLQKTSALMF--NLSTLTADFYSLLFGIFMFKDTFHYLYFVSFIVCIIGSVIYSM 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,701,950
Number of Sequences: 27780
Number of extensions: 387029
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)