Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c06
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 320 2e-88
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 1.1
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 28 1.4
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 1.9
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 1.9
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 4.4
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 4.4
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 5.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 7.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 7.6
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 7.6
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 26 7.6
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 320 bits (786), Expect = 2e-88
Identities = 148/227 (65%), Positives = 186/227 (81%), Gaps = 1/227 (0%)
Frame = -2
Query: 840 HKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNV-KHNTEKVAEGALPVYLLD 664
H + A+K RGIKAK++ ++RR EKIQMKK IK HEE+N + ++ +GA+P YLLD
Sbjct: 33 HDASLYAQKTRGIKAKLYQEKRRKEKIQMKKTIKQHEERNATQRGSDAQTQGAVPTYLLD 92
Query: 663 RDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTK 484
R+ +S+AK+LS+ +KQKRKEKA K+ VP+P+VR A+ E+FKV+++GKSK+ +WKRM+TK
Sbjct: 93 REQESQAKMLSSAVKQKRKEKAAKYSVPLPQVRGVAEEEMFKVIRTGKSKKNSWKRMITK 152
Query: 483 VTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLG 304
TFVG+ FTR+P K+ERFIRPMALR KKA+VTH EL T LPIIGVKKNP S YT LG
Sbjct: 153 ATFVGDGFTRRPVKYERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKNPQSPTYTQLG 212
Query: 303 VITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLL 163
V+TKGTVIEVN+SELGLVT GKVVWGKYAQ+TNNPE DGC+NA+LL
Sbjct: 213 VLTKGTVIEVNVSELGLVTSGGKVVWGKYAQITNNPELDGCVNALLL 259
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 691 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYFS 798
F LL F +L F+ F F F F++ I YFS
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFS 148
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 423 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 301
PM F + HP K FC+P + ++ P LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/84 (26%), Positives = 45/84 (53%)
Frame = -2
Query: 780 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 601
E+ + K+++ ++ +K ++ TEK+ + + +R VQS + +M +QK +E
Sbjct: 82 EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140
Query: 600 AGKWDVPIPKVRAQADAEVFKVLK 529
K+ KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = -2
Query: 390 THPELKATFCL-PIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVV-WGKY 217
T P ++A FC+ P + + PS + +L + + ++ E+N +VTQ+ K
Sbjct: 137 TSPGIRAGFCIFPSLNI---PSGE---NLQIKSSSSLEEINKIPENIVTQSLSYTNLLKK 190
Query: 216 AQVTNNPENDGCINAVLL 163
+ + NP N+GC ++ L
Sbjct: 191 FETSPNPSNNGCFRSLAL 208
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -2
Query: 564 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 427
A +++ K+L + K+ KR+V+++T + N T + +R++
Sbjct: 883 ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 840 HKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALP 679
HK+ +K + K+ +KE + KKKIK ++ + EKV EG P
Sbjct: 203 HKKKDKESSSKKRKSGSSDKEEKK-----KKKIKLKDKPESTSSVEKVKEGNRP 251
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = -2
Query: 828 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQS 649
E+ + R + K + ++ IQ +K+ E + HNT + G + D DV++
Sbjct: 595 EEIERCRLLLKKEIGQLESDDYIQFEKEFL--ETYSALHNTSSLLPGLVIYEEDDEDVEA 652
Query: 648 RAKVLSNMIKQKRKEKA 598
K +N I++ +KA
Sbjct: 653 AEKFYTNDIQRDLAKKA 669
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 730 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAF 837
FV D FL+ LF LI +F+ F LFS F
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTF 207
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -3
Query: 245 RLVKLCGVNTLKS---RIIRRMMAALMLCCWSNLLLSQGKIKMLQLHLLNCDNYTFNNEH 75
R+ +LC N + ++ +M L++C W++ L+Q ++ Q + N
Sbjct: 858 RIFELCLDNLTQEFLDPLLDSIMPDLLICLWNHSRLNQSNNQLHQSAVRILGKMGGRNRQ 917
Query: 74 VYHNTYNLYWLQ 39
+Y T+ +LQ
Sbjct: 918 IYLGTFGFDFLQ 929
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 711 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 577
N K +E + +++D+ R+ +LSN+ K K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = -2
Query: 822 ARKLRGIKAKIFNKERRNEK-IQMK-KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ- 652
++++ ++ +I++ EK ++++ KKIK+ +EK + H + + E L +V+
Sbjct: 58 SKRIMDLQGRIYDLNVTMEKKLKIEEKKIKSKQEKEIAHALQSIQERELRERQQMSNVEA 117
Query: 651 SRAKVLSN 628
S A++L+N
Sbjct: 118 SNAQLLTN 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,788
Number of Sequences: 5004
Number of extensions: 66185
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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