Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c06
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 343 1e-94
03_02_0189 - 6253659-6255380 32 0.49
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 31 1.1
04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986... 30 2.0
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306... 29 4.6
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 29 4.6
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 29 4.6
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 29 6.1
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 29 6.1
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 6.1
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 28 8.1
>07_03_1651 - 28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 343 bits (843), Expect = 1e-94
Identities = 162/227 (71%), Positives = 183/227 (80%)
Frame = -2
Query: 840 HKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDR 661
HKR+ AR+L G K K F K+R EK QMKK +K H+E + + V EGALP YLLDR
Sbjct: 364 HKRSRDARQLLGAKGKRFAKKRYAEKAQMKKTLKMHDESTSRQKVDDVQEGALPPYLLDR 423
Query: 660 DVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
D RAKVLSN IKQKR EKAGKW+VP+PKVR A+ E+FKVL++GK K K WKRMVTK
Sbjct: 424 DQTQRAKVLSNTIKQKRMEKAGKWEVPLPKVRPVAEEEMFKVLRTGKRKTKQWKRMVTKA 483
Query: 480 TFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 301
TFVG FTRKPPK+ERFIRP LRF KAHVTHPELK TF L II VKKNP+ QMY++LGV
Sbjct: 484 TFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLDIISVKKNPNGQMYSTLGV 543
Query: 300 ITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 160
+T+GT+IEVN+SELGLVT AGKVVWGKYAQVTNNPENDGCINAVLLV
Sbjct: 544 LTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 590
>03_02_0189 - 6253659-6255380
Length = 573
Score = 32.3 bits (70), Expect = 0.49
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Frame = -2
Query: 630 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV--LKSGKSKRKAWKRMVTKVTFVGENFT 457
N ++ +KEKA + P P RA A KV S +K K V K T +
Sbjct: 68 NKVEYGKKEKATRIGGPKPSSRASALKVKPKVSSFNSKPAKSTLPKSAVVKKTLKIDESL 127
Query: 456 RKPPKFERFIRPMAL--RFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTV 283
FE P L R K ++ P + +PII K + Q YT G T +
Sbjct: 128 FSAKSFEELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSGK-TLAYL 186
Query: 282 IEVNISELG 256
+ + +SE+G
Sbjct: 187 LPI-LSEIG 194
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +2
Query: 347 PIIGKQKVAFSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 526
PII AF+ A + + L+ + + GL+V F + L F + FD
Sbjct: 389 PIITITDNAFNPVGYCLAIMKSEGVNLIGENFMSGLKVVFDRERMVLGWKNFNCYNFDES 448
Query: 527 DFRTLNTSASAWALTLGMGTSHF 595
+N S SA G+G S +
Sbjct: 449 SRLPVNPSPSAVPSKPGLGPSSY 471
>04_04_1253 +
32097840-32097963,32098154-32098329,32098413-32098622,
32098720-32098879,32098993-32099212,32099288-32099438
Length = 346
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = -2
Query: 699 VAEGALPVYLLDRDVQSRAKVLSN----MIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 532
VA GA P +D V + +++ M K EKA W +P+ + AE+F
Sbjct: 201 VAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAE 260
Query: 531 KSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 439
+ S R + T VT + K P++
Sbjct: 261 EESASGRYICGSLNTTVTEIAGFLAAKYPQY 291
>12_01_0388 +
3059296-3060076,3060290-3061474,3061565-3061695,
3061793-3061873,3062329-3062367
Length = 738
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = -2
Query: 837 KRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRD 658
K E +L+ + A +E+ K++ +KK A +EK+ ++ + V+ L+D
Sbjct: 616 KLVESLCELKRLNAHASGREKDGSKVEKRKKKSAKQEKSSRNVKQAVSSQTADTVLVDPP 675
Query: 657 VQSR 646
Q++
Sbjct: 676 NQNQ 679
>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
Length = 271
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 708 TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 547
TE++ EG + L D++ + +M+K KEK K P P++ +A AE
Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/84 (21%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = -2
Query: 828 EKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQS 649
E+ARK + + + +ER E+I++ K++ E K ++ + E+ + + + L+++ +
Sbjct: 192 ERARKKKEEEERRMEREREKERIRIGKELL--EAKRIEEDNER--KRMIELRRLEKEEEK 247
Query: 648 RAK-VLSNMIKQKRKEKAGKWDVP 580
RA+ + +++ + E+ K +P
Sbjct: 248 RAREKIRQKLEEDKAERRRKLGLP 271
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 281 ITVPLVMTPKLVYICELGFFLTPIIGK 361
+TV L+MTP +++ + F L +IGK
Sbjct: 71 LTVSLIMTPLALFVAFVSFHLAALIGK 97
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 684 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLKSG 523
LP+Y +DRD + +LS + + R + A + +P+ + A + DA+ + +L G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 567 RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK--PPKFERFIRP 421
+ Q +V K +KSG KRK+ K++ T VTF +K PK+ R P
Sbjct: 13 KTQQALKVAKAVKSGSIKRKS-KKIRTSVTFHRPKTLKKARDPKYPRVSAP 62
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 28.3 bits (60), Expect = 8.1
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 4/157 (2%)
Frame = -2
Query: 714 HNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV 535
H+ + V + + P+ L +VQ N ++ +KE+A + P RA A KV
Sbjct: 509 HDIQTVEDKSGPLTLASLEVQ-------NKVEYVKKERATRTGGIKPSSRASALNMKPKV 561
Query: 534 LK-SGKSKRKAW-KRMVTKVTFVGENFTRKPPKFERFIRPMAL--RFKKAHVTHPELKAT 367
+ K + A K V K T + FE P L R K +T P +
Sbjct: 562 SSFNAKPVKSALPKSAVLKKTLKIDESLFSAKSFEELGLPPLLIDRLNKEGLTAPTEVQS 621
Query: 366 FCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISELG 256
+PII K + Q YT G T ++ + +SE+G
Sbjct: 622 AAIPIISQKHDAVIQSYTGSGK-TLAYLLPI-LSEIG 656
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,889,865
Number of Sequences: 37544
Number of extensions: 384119
Number of successful extensions: 1089
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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