Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10c04
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical pr...    35   0.061
X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP translo...    35   0.061
Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical ...    30   1.7  
U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical
           protein T27E9.1a protein.
          Length = 300

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -1

Query: 820 VLRGTGGAFVLVLYDEIKKVL 758
           V RGTGGA VL +YDEI+K L
Sbjct: 280 VFRGTGGALVLAIYDEIQKFL 300


>X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP
           translocase protein.
          Length = 300

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -1

Query: 820 VLRGTGGAFVLVLYDEIKKVL 758
           V RGTGGA VL +YDEI+K L
Sbjct: 280 VFRGTGGALVLAIYDEIQKFL 300


>Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical
           protein K01H12.2 protein.
          Length = 313

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 820 VLRGTGGAFVLVLYDEIKKVL 758
           V RGTGGA VL +YDEI+K +
Sbjct: 293 VFRGTGGALVLAIYDEIQKFI 313


>U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical
           protein T01B11.4 protein.
          Length = 313

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 820 VLRGTGGAFVLVLYDEIKKVL 758
           V RGTGGA VL +YDEI+K +
Sbjct: 293 VFRGTGGALVLAIYDEIQKFI 313


>AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical
           protein W02D3.6 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 820 VLRGTGGAFVLVLYDEIKKVL 758
           V R TGGA VL +YDEI+ ++
Sbjct: 280 VFRATGGALVLTIYDEIQHLI 300


>U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical
           protein F25B4.7 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 817 LRGTGGAFVLVLYDEIKKVL 758
           +RGTG A VL +Y+E++K +
Sbjct: 287 IRGTGAALVLAIYNELQKYM 306


>Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical
           protein F25H9.3 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 VNY*VQHTNLTSHKCQRYII 190
           +NY  Q TNL + KC RY++
Sbjct: 13  INYFTQFTNLEAVKCHRYVL 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,332
Number of Sequences: 27780
Number of extensions: 349683
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)