Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10c02
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 29 0.57
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 28 1.7
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 5.3
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 26 5.3
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 5.3
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 26 7.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.0
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 26 7.0
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 26 7.0
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 26 7.0
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 747 HRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLT 592
HR+DI++ Q + L+ K Q +N+ ++ K + EK + L DN++
Sbjct: 59 HRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVS 110
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 228 DEKSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFEFENDS 109
D+ S+VF + +Q I L +HS SV F NDS
Sbjct: 201 DQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDS 240
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 5.3
Identities = 32/153 (20%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
Frame = -3
Query: 555 LNNKKIRNYYLKKICILLN-----LNFKHVIESSFDKNHIVAKLCDATRAKEWQTMSRER 391
+N + + Y L+K ILL+ +NFKH++ ++H++ ++E S +
Sbjct: 1 MNFRPEQQYILEKPGILLSFEQLRINFKHILRHLEHESHVINSTLTTLISQE--NASMDE 58
Query: 390 RLKNFNLNINYDGPVKIFVAATAE-QKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSR 214
+++ + ++ VK + + + L +K+T+ LL F + ++ + SR
Sbjct: 59 KIEKIDSLLSRVSTVKKKMKHLHDCEALFIKQTKSRLL-FMNRLQGIRDMESADFLDWSR 117
Query: 213 VFIVKNEQNIEYLKANKYYAFHSDSVDNFEFEN 115
V + N +Y+ AN Y+ + + + EN
Sbjct: 118 VRL--NRLVADYMMANGYHGAAALLCKDSQLEN 148
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 99 AFFCYRFQTQNYQRYRY 149
+FFC+R Q Q+ +YRY
Sbjct: 155 SFFCFRRQIQHMLKYRY 171
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -3
Query: 747 HRVD--IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKS 634
HR++ ++ ++ E++ +S L++L+ Q+D N N+K+
Sbjct: 735 HRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 315 KLLLKKTRDALLPFYK-YISICKNGVMVRRDEKSRVFIVKNEQNIEYLKAN 166
K+++ +D L+ FY + CK + + +VF KNE N+E +K N
Sbjct: 152 KVVMDDKKDVLVEFYADWCGYCKR-LAPTYETLGKVF--KNEPNVEIVKIN 199
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 717 FEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSIE 580
F+ L+++ LKS+ +TQ+D + + M+ L D+L SIE
Sbjct: 3741 FKHLVSLQSLKSISRTQVDLTNDEFLNLMNFVLNLF--DSLLSSIE 3784
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -3
Query: 237 VRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFEFENDSKKMLQN 91
+RR+ + + + Q L NK F S NF F N S K N
Sbjct: 171 LRRNTSKKSSLSDSSQKENTLTLNKENEFSSKDDSNFAFHNSSTKTTIN 219
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 621 LKRLECDNLTDSIEIYGIHDNRLNN 547
LK LECD L SIE+ H + ++
Sbjct: 3 LKCLECDKLLSSIEMAEFHSTKTSH 27
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 658 FVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWCVKY 768
F RF+Q+ +R + L + N I PM+++C KY
Sbjct: 586 FKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC-KY 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,658
Number of Sequences: 5004
Number of extensions: 47853
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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