Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10b17
         (672 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024438-1|ABC86500.1|  375|Drosophila melanogaster IP02107p pro...    33   0.35 
AE013599-1590|AAF58452.1|  375|Drosophila melanogaster CG17584-P...    33   0.35 
AY122127-1|AAM52639.1|  534|Drosophila melanogaster GH22661p pro...    30   3.3  
AF325712-1|AAG50021.1|  534|Drosophila melanogaster beaten path ...    30   3.3  
AE014134-2665|AAF53498.2|  534|Drosophila melanogaster CG4838-PA...    30   3.3  

>BT024438-1|ABC86500.1|  375|Drosophila melanogaster IP02107p
           protein.
          Length = 375

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 310 ITKSRIFYSLITEAGYKIYPLIKSEFIMPLKFRCEGLS 197
           + +  +F+ ++T  G+ +YPL  SE ++P   +  GL+
Sbjct: 119 MARGNLFFGMLTSMGFGLYPLSSSERVLPFGSKIPGLN 156


>AE013599-1590|AAF58452.1|  375|Drosophila melanogaster CG17584-PA
           protein.
          Length = 375

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 310 ITKSRIFYSLITEAGYKIYPLIKSEFIMPLKFRCEGLS 197
           + +  +F+ ++T  G+ +YPL  SE ++P   +  GL+
Sbjct: 119 MARGNLFFGMLTSMGFGLYPLSSSERVLPFGSKIPGLN 156


>AY122127-1|AAM52639.1|  534|Drosophila melanogaster GH22661p
           protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 253 DRSYILLQ*SENRIFGISLCSHSVLAQFW------TPITRRISAAW 372
           + SY+    ++N   G S  +H +  QFW       PI R+++ AW
Sbjct: 308 NESYLTYYSADNTASGASTAAHEIFWQFWPSQLTKLPINRQLAGAW 353


>AF325712-1|AAG50021.1|  534|Drosophila melanogaster beaten path Ic
           protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 253 DRSYILLQ*SENRIFGISLCSHSVLAQFW------TPITRRISAAW 372
           + SY+    ++N   G S  +H +  QFW       PI R+++ AW
Sbjct: 308 NESYLTYYSADNTASGASTAAHEIFWQFWPSQLTKLPINRQLAGAW 353


>AE014134-2665|AAF53498.2|  534|Drosophila melanogaster CG4838-PA
           protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 253 DRSYILLQ*SENRIFGISLCSHSVLAQFW------TPITRRISAAW 372
           + SY+    ++N   G S  +H +  QFW       PI R+++ AW
Sbjct: 308 NESYLTYYSADNTASGASTAAHEIFWQFWPSQLTKLPINRQLAGAW 353


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,700,305
Number of Sequences: 53049
Number of extensions: 509813
Number of successful extensions: 1019
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)