Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10b16
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    27   3.3  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   4.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.7  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 630 QFSFEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS 731
           +F+ EK + +F+K  F+K+ + +  C++   F S
Sbjct: 27  KFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGS 60



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 450 QFSFEKQMTSFLKFSFEKQMTSSLDCVL 533
           +F+ EK + +F+K  F+K+ + +  C++
Sbjct: 27  KFTIEKDIAAFIKREFDKKFSPTWHCIV 54


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 97  CFSKLNSLYE*NSTCNARSVDDVIYLCKAD 8
           C  KL SLYE  +   A++V+D + L +AD
Sbjct: 99  CEKKLESLYEEVAKAKAKAVEDQLALEEAD 128


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 725  LLVKRVKAMTSFTYGNYSASQTAV 796
            L+++RV +++   YGN   +QTA+
Sbjct: 3653 LIMRRVASLSQVAYGNLPVNQTAI 3676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,663
Number of Sequences: 5004
Number of extensions: 65976
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)