Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10b16
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226...    36   0.040
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527...    36   0.040
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261...    32   0.65 

>07_03_1599 -
           28022196-28022218,28022355-28022408,28022545-28022620,
           28022727-28022758,28022921-28023016,28023105-28023206,
           28023291-28023366
          Length = 152

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -3

Query: 826 HPLSKTTGNSDGRLGCGIIAI 764
           H LSKTTGN+ GR+ CGII +
Sbjct: 130 HELSKTTGNAGGRVACGIIGL 150


>03_02_1006 +
           13150394-13150450,13150787-13150899,13152538-13152709,
           13153791-13153878,13153971-13154072,13154197-13154292,
           13154547-13154578,13154727-13154802,13155264-13155317,
           13155431-13155453
          Length = 270

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -3

Query: 826 HPLSKTTGNSDGRLGCGIIAI 764
           H LSKTTGN+ GR+ CGII +
Sbjct: 248 HELSKTTGNAGGRVACGIIGL 268


>08_02_1596 +
           28125331-28125556,28125986-28126047,28126160-28126199,
           28126934-28127029,28127138-28127169,28127274-28127349,
           28127430-28127483,28127916-28127941
          Length = 203

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 826 HPLSKTTGNSDGRLGCGIIAI 764
           H LS +TGN+ GRL CG++ +
Sbjct: 180 HELSLSTGNAGGRLACGVVGL 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,860,575
Number of Sequences: 37544
Number of extensions: 310082
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)