Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10b16
         (834 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY745232-1|AAU93511.1|   75|Anopheles gambiae SOD3A protein.           38   4e-04
AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismuta...    33   0.011
AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.           29   0.17 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            28   0.40 
DQ013848-1|AAY40257.1|  304|Anopheles gambiae CYP325D1 protein.        27   0.93 
AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    23   8.7  
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    23   8.7  

>AY745232-1|AAU93511.1|   75|Anopheles gambiae SOD3A protein.
          Length = 75

 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 826 HPLSKTTGNSDGRLGCGIIAICK 758
           H LSKTTG++  RL CG+I +CK
Sbjct: 52  HELSKTTGDAGARLACGVIGLCK 74


>AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismutase
           2 protein.
          Length = 211

 Score = 33.1 bits (72), Expect = 0.011
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 832 TEHPLSKTTGNSDGRLGCGIIAI 764
           T HP S  TGN+ GR+ CG+I I
Sbjct: 148 TNHPDSLKTGNAGGRVACGVIGI 170


>AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.
          Length = 100

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 829 EHPLSKTTGNSDGRLGCGIIAICK 758
           +H  SKTTGNS   + C II + +
Sbjct: 67  KHDYSKTTGNSGNCIACAIIGVAR 90


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 630  QFSFEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS*SELKR*HHLHM 767
            Q+ ++KQ    L+FS  K+   +LD V+H  + S  ++ R   +H+
Sbjct: 1938 QYLYDKQ--GILRFSLHKEHNETLDRVIHFTYVSDDKVAREALVHL 1981



 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 450  QFSFEKQMTSFLKFSFEKQMTSSLDCVLH 536
            Q+ ++KQ    L+FS  K+   +LD V+H
Sbjct: 1938 QYLYDKQ--GILRFSLHKEHNETLDRVIH 1964


>DQ013848-1|AAY40257.1|  304|Anopheles gambiae CYP325D1 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -3

Query: 385 LNWLYE*NSTCKTQSKDDVICFSKLNDVI 299
           ++W+Y+  + CK +S     C+S ++ V+
Sbjct: 78  IDWVYKHTNNCKIESASRAACYSVVDKVL 106



 Score = 25.0 bits (52), Expect = 2.8
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -3

Query: 637 LNWLYEYNSTCKT*SRDDVICFSKLNSL 554
           ++W+Y++ + CK  S     C+S ++ +
Sbjct: 78  IDWVYKHTNNCKIESASRAACYSVVDKV 105



 Score = 24.6 bits (51), Expect = 3.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 457 LNWLYEYNSTCKT*SRDDVICFS 389
           ++W+Y++ + CK  S     C+S
Sbjct: 78  IDWVYKHTNNCKIESASRAACYS 100


>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 741 LKR*HHLHMAIIPHPKRPSELPVVLLN 821
           LK  H LH   + H   P   PV++LN
Sbjct: 174 LKELHELHENWLIHGASPRPAPVLVLN 200


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 741 LKR*HHLHMAIIPHPKRPSELPVVLLN 821
           LK  H LH   + H   P   PV++LN
Sbjct: 175 LKELHELHENWLIHGASPRPAPVLVLN 201


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 769,343
Number of Sequences: 2352
Number of extensions: 12980
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88065063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)