Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10b12
(424 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 126 1e-30
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 126 1e-30
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 126 1e-30
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 126 1e-30
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 126 1e-30
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 84 7e-18
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 46 2e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 44 1e-05
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 29 0.23
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 27 1.2
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 27 1.6
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 2.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 2.8
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 25 3.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 3.7
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 4.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 6.4
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 24 8.5
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 126 bits (304), Expect = 1e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 84.2 bits (199), Expect = 7e-18
Identities = 37/76 (48%), Positives = 54/76 (71%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
M I +KTLTGK I + +P + V+ +K+++ +KEG+P QQRLI+AGKQ+ D K Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 49 IQKESTLHMVLRLRGG 2
++ S LH+VL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 46.4 bits (105), Expect = 2e-06
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAET-VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 53
M + K L + A+T +++LK+KI ++ V++Q+LI++G+ L D KT+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 52 NIQKE 38
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 43.6 bits (98), Expect = 1e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
+ + IK + + +V LK+ IA + ++QRLI+AG+ L+D +++ Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 49 IQKESTLHMVLRL 11
IQ ++H+V L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 29.5 bits (63), Expect = 0.23
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 226 QIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD--Y 53
+I + T+ K + +TV +LK+ IA P D+ +LI AG+ L + + + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 52 NIQKESTLHMVL 17
+ T H+V+
Sbjct: 65 DATDLVTFHLVI 76
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -1
Query: 169 ETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLR 14
E ++D +IAD D++++I+A + + + +AD+N H +L+
Sbjct: 534 ELLSDHNFEIADLRDELQDKEQIIYALRYAQKQRDIADFNQSLAKFPHKILK 585
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 228 IFTLLLTNDNGC-RECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQKLSGRRAR 398
+F LLL D+G + C ++ A DT+T +++ + +DF R +L G+ +
Sbjct: 8 LFKLLLIGDSGVGKSCL-------LLRFADDTYTESYISTIGVDFKIRTFELEGKTVK 58
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 2.1
Identities = 23/95 (24%), Positives = 47/95 (49%)
Frame = -1
Query: 301 TVPPSVEAGAHSRQPLSFVSNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGV 122
T+ +++ + S+ L+ + ++ +I K+L + +TE A+ +A + +KI E
Sbjct: 403 TLNRNIKVTSQSKDSLTSIVGDLESKI--KSLHESVSSLDTERADLLAKINEKIESLELE 460
Query: 121 PVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVL 17
DQQ+ +L KT + N + +S L +L
Sbjct: 461 KHDQQKKRLTYSEL-FHKTQ-ELNEELQSCLQKIL 493
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 2.8
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 92 RKDKSLLIYGHTFFIGNFLLEIGHRLCGFRFGGNGFARQCFD 217
RK+ +YGH F F + LCG F N QC D
Sbjct: 396 RKESVHEVYGHKFLQHQFYQIMRCALCG-EFLKNAAGMQCID 436
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 3.7
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -1
Query: 202 GKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHM 23
G I +TV D K+K+ + V +L++ G L D + D ++ ES +
Sbjct: 9 GNVIALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKG-NLSDDSHLQDV-VKNESKIMC 66
Query: 22 VLR 14
++R
Sbjct: 67 LIR 69
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 233 KNANIHQNIDGQNHYRRNGTRRDGGRSQAKN 141
K+ N Q+I G+++ R+N GRS N
Sbjct: 1518 KDKNKRQDISGESNSRQNNAISRAGRSNGSN 1548
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 62 HSFGIFQLFARKDKSLLIYGH 124
H FGIF + D S+ YGH
Sbjct: 260 HVFGIFVQYPAADGSIFDYGH 280
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 6.4
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 178 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDS-KTMADYNIQKES 35
EPA + L ++ +D+E D++ F G L+ S KT+ D+ ++E+
Sbjct: 26 EPASSRRRLAEENSDEENEEFDEEGGRFFGSGLKKSEKTVLDFLDEQEA 74
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 59 GHSFGIFQLFARKDKSLLIYGHTFFIGNFLLE 154
G +FG+ ++F D + G +GN +LE
Sbjct: 79 GSAFGLDKIFQSSDSGNIAEGLELDLGNIMLE 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,673
Number of Sequences: 5004
Number of extensions: 40561
Number of successful extensions: 121
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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