Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10b12
(424 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 126 7e-30
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 126 7e-30
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 126 7e-30
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 126 7e-30
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 126 7e-30
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 92 2e-19
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 73 1e-13
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 62 2e-10
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 62 2e-10
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 57 6e-09
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 56 1e-08
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 45 3e-05
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 45 3e-05
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 41 4e-04
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 38 0.003
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 37 0.005
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 35 0.021
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 34 0.036
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 33 0.084
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.45
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 29 1.0
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 29 1.0
AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical ... 29 1.0
Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 29 1.8
AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical... 28 2.4
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 27 5.5
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 27 5.5
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 27 7.3
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 27 7.3
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 27 7.3
Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 26 9.7
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 26 9.7
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 26 9.7
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 26 9.7
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 124 bits (298), Expect = 3e-29
Identities = 56/76 (73%), Positives = 67/76 (88%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTL GKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 74.1 bits (174), Expect = 4e-14
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAG 89
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAG
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 745 IQKESTLHLVLRLRGG 760
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 821 IQKESTLHLVLRLRGG 836
Score = 124 bits (298), Expect = 3e-29
Identities = 56/76 (73%), Positives = 67/76 (88%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTL GKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 745 IQKESTLHLVLRLRGG 760
Score = 125 bits (301), Expect = 2e-29
Identities = 56/76 (73%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 49 IQKESTLHMVLRLRGG 2
IQK+STLH+VLRLRGG
Sbjct: 821 IQKQSTLHLVLRLRGG 836
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 126 bits (304), Expect = 7e-30
Identities = 57/76 (75%), Positives = 68/76 (89%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 49 IQKESTLHMVLRLRGG 2
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 91.9 bits (218), Expect = 2e-19
Identities = 43/76 (56%), Positives = 54/76 (71%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
M I +KTLTGK I + EP + V +K+K+ +KEG+P QQRLIFAGKQ+ D KT ADY
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYK 60
Query: 49 IQKESTLHMVLRLRGG 2
+ S LH+VL LRGG
Sbjct: 61 VLGGSVLHLVLALRGG 76
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 72.5 bits (170), Expect = 1e-13
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = -1
Query: 232 KMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 53
K+ + +KTL GKTI + +TV LK K+ +K GVP DQQRLIF QLE+ + + Y
Sbjct: 160 KLTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAY 219
Query: 52 NIQKESTLHMVLRLR 8
NI+ E +H+V R R
Sbjct: 220 NIRDEDIIHLVSRHR 234
Score = 35.5 bits (78), Expect = 0.016
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 208 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 29
+TG IT E A + DL K+A+ + P ++ +D +T++DYNI+ STL
Sbjct: 98 VTGDPITVEASDA--IKDLNFKVAEAQRKPHQPSNIVLC----KDQRTISDYNIKNGSTL 151
Query: 28 HM 23
+
Sbjct: 152 RL 153
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 268 SRQPLSFVS-NSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGV 122
S+ P +S +S M + +KT TGKTIT E ++K ++ DK+GV
Sbjct: 45 SKLPEDQISVDSKTMLLSVKTSTGKTITVEAP-----KNVKTEVRDKQGV 89
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 61.7 bits (143), Expect = 2e-10
Identities = 33/74 (44%), Positives = 47/74 (63%)
Frame = -1
Query: 223 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQ 44
+F+KTL +T+ E E V +KQKI EG+P ++QRL +AG+QLEDS D I
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDS----DCGID 56
Query: 43 KESTLHMVLRLRGG 2
E+T+++ L L GG
Sbjct: 57 SEATIYVNLELLGG 70
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 61.7 bits (143), Expect = 2e-10
Identities = 33/74 (44%), Positives = 47/74 (63%)
Frame = -1
Query: 223 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQ 44
+F+KTL +T+ E E V +KQKI EG+P ++QRL +AG+QLEDS D I
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDS----DCGID 56
Query: 43 KESTLHMVLRLRGG 2
E+T+++ L L GG
Sbjct: 57 SEATIYVNLELLGG 70
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 56.8 bits (131), Expect = 6e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVP 119
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 55.6 bits (128), Expect = 1e-08
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = -1
Query: 232 KMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 53
+ QIF+K L G + + +TV D+K I + +P L F+GK+LED ++ DY
Sbjct: 153 EFQIFVKVL-GVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDY 211
Query: 52 NIQKESTLHMVLR 14
NIQK ST+ M R
Sbjct: 212 NIQKSSTITMYFR 224
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/69 (27%), Positives = 42/69 (60%)
Frame = -1
Query: 208 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 29
+ G + + +++LKQ+I D+ G+PV +Q+L+ G ++D+ + A YN+ + +
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAI 643
Query: 28 HMVLRLRGG 2
++ ++ RGG
Sbjct: 644 YLQVKERGG 652
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/69 (27%), Positives = 42/69 (60%)
Frame = -1
Query: 208 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 29
+ G + + +++LKQ+I D+ G+PV +Q+L+ G ++D+ + A YN+ + +
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAI 643
Query: 28 HMVLRLRGG 2
++ ++ RGG
Sbjct: 644 YLQVKERGG 652
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = -1
Query: 199 KTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLED-SKTMADYNIQKESTLHM 23
K I E + ETV+ LK +I + V ++Q L+F G +L+D +KTM D I ++ + M
Sbjct: 32 KQIVVEMKDKETVSILKNRIEQETEVLTNRQVLLFKGMELKDNNKTMTDCGINSDAKITM 91
Query: 22 VLRLRGG 2
+++ G
Sbjct: 92 NVKMSTG 98
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = -1
Query: 223 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGK 86
+F+KTL +T+ E E V +KQKI EG+P ++QRL +A +
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAAR 46
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = -1
Query: 253 SFVSNSVK-MQIFIKTLTGKTITAETEPAETVADLKQKIADKEG--VPVDQQRLIFAGKQ 83
SF++N + + + +TLT E +T+A++K +A ++G + Q+LI+ GK
Sbjct: 43 SFINNQMMVLSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKI 102
Query: 82 LEDSKTMADYNIQKESTLHMVLRLR 8
L+DS + + + ++L R
Sbjct: 103 LDDSVKVGEVGFDSSKFVVVMLSKR 127
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -1
Query: 172 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 29
++T+ +K I V + R++ K LED T+A YNIQ+ STL
Sbjct: 192 SDTIRQVKLTINSLANVDISSFRMVLRDKVLEDDHTLAYYNIQEGSTL 239
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 35.1 bits (77), Expect = 0.021
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -1
Query: 172 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLR 8
++T+ +K +I V + R++ GK LED ++A YNIQ+ + + + L+
Sbjct: 215 SDTIRHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQEGALIWLYSHLK 269
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 34.3 bits (75), Expect = 0.036
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 211 TLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 53
++ G+ + E+V LK KI + G+P + L GK L D K +ADY
Sbjct: 149 SMPGRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADY 201
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 33.1 bits (72), Expect = 0.084
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 172 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 29
++T+ +K +I G+ R K LED T+A YNI++ ST+
Sbjct: 181 SDTIRQIKPRINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 30.7 bits (66), Expect = 0.45
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -1
Query: 301 TVPPSVEAGAHSRQPLSFVSNS-VKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEG 125
TVPP EA + P++ S + V M + +T T+T++TEP +T + ++I +
Sbjct: 723 TVPPKTEA-PRTEVPMTGPSRTEVPMTVTPETGLSSTVTSKTEPPKTTTE--KRITPRTE 779
Query: 124 VP 119
VP
Sbjct: 780 VP 781
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 255 NGCRECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQKL 380
N CR TDG V TH NH+P DF + + K+
Sbjct: 3 NECRSLRNMETDGFQVVTEVVTHKLNHIPIFKGDFASLSPKV 44
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 255 NGCRECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQKL 380
N CR TDG V TH NH+P DF + + K+
Sbjct: 3 NECRSLRNMETDGFQVVTEVVTHKLNHIPIFKGDFASLSPKV 44
>AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical
protein ZC328.5 protein.
Length = 191
Score = 29.5 bits (63), Expect = 1.0
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = -1
Query: 262 QPLSFVSNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQ 83
+P FV N IF L G T+T +T + +A+ K+K+ +G + IF
Sbjct: 109 RPTDFVKNGGMPLIFKLYLNG-TVTCDTATIDELANTKEKMYYPDGGSYWLFKSIFDNYS 167
Query: 82 LEDSKTMADYNIQKESTLHMVL 17
L Y +K S L +L
Sbjct: 168 LSVKDPAMGYKRRKRSILSWLL 189
>Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical
protein F39B2.10 protein.
Length = 402
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 217 IKTLTGKTITAETEPAETVADLKQKIADKEGVPV 116
I TL G+TI P E +A K+ EG+P+
Sbjct: 279 ISTLDGRTIFYRVLPGEVIAHADVKVIHNEGMPM 312
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQ-LEDSKTMADY 53
M + IKT TGK IT E + +K ++ DK+GV G Q +E T+ D
Sbjct: 1 MLLSIKTSTGKNITVEAPKS-----VKTEVRDKQGVVFTVSYDKGTGNQIIEMEDTVQDV 55
Query: 52 NIQK 41
IQ+
Sbjct: 56 KIQE 59
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 247 VSNSVKMQIFIKTLTGKTIT 188
VS ++ +F+KT TGKTIT
Sbjct: 175 VSIEKEIDVFVKTYTGKTIT 194
>AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical
protein F52C6.2 protein.
Length = 110
Score = 28.3 bits (60), Expect = 2.4
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQ-LEDSKTMADY 53
M + IKT TGKTIT E + +K ++ K+GV AG Q +E T+ D
Sbjct: 1 MLLSIKTSTGKTITVEAPKS-----VKTEVRYKQGVVFAVSYDKDAGNQIIEMEDTVQDV 55
Query: 52 NIQK 41
IQ+
Sbjct: 56 KIQE 59
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
363, isoform b protein.
Length = 2692
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 247 VSNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFA 92
V + V ++ +TLTG I ++EP A K + E P + QR++ A
Sbjct: 534 VQDGVMASVY-QTLTGSLIPPKSEPIGRPASPKAILQKAETDPKELQRIVLA 584
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
363, isoform a protein.
Length = 2695
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 247 VSNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFA 92
V + V ++ +TLTG I ++EP A K + E P + QR++ A
Sbjct: 534 VQDGVMASVY-QTLTGSLIPPKSEPIGRPASPKAILQKAETDPKELQRIVLA 584
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 214 KTLTGKTITAETEPAETVADLKQKIADKEGVP 119
+ L G + A T+P + V D +++ KEGVP
Sbjct: 812 QVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/32 (25%), Positives = 21/32 (65%)
Frame = -1
Query: 118 VDQQRLIFAGKQLEDSKTMADYNIQKESTLHM 23
V+ L + G++L+D++++ YNI + +++
Sbjct: 124 VESFNLYYGGQKLQDNRSIGSYNIDQSREIYL 155
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 214 KTLTGKTITAETEPAETVADLKQKIADKEGVP 119
+ L G + A T+P + V D +++ KEGVP
Sbjct: 812 QVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>Z68879-4|CAA93085.1| 215|Caenorhabditis elegans Hypothetical
protein K08F4.5 protein.
Length = 215
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -1
Query: 241 NSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTM 62
+ K IKT T + TA PAE V + K++ KE VP ++ + E++K
Sbjct: 39 DKTKAMSAIKTTTMGSTTANMHPAEPVVEKKEE--PKEKVPEKKEEEKKDATKKEEAKEE 96
Query: 61 ADYNIQKE 38
+KE
Sbjct: 97 KKEEERKE 104
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 234 TLLLTNDNGCRECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQKLSGRRARSDRCF 413
TL + + ++ + +++D GT + ++N PST+ D +Q S + SD
Sbjct: 903 TLEASTTDASQDSSTSTSDSGTTSDSTTIDSSNSTPSTS-DSSGLSQTPSDSSSASDSMR 961
Query: 414 QTT 422
TT
Sbjct: 962 TTT 964
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 234 TLLLTNDNGCRECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQKLSGRRARSDRCF 413
TL + + ++ + +++D GT + ++N PST+ D +Q S + SD
Sbjct: 903 TLEASTTDASQDSSTSTSDSGTTSDSTTIDSSNSTPSTS-DSSGLSQTPSDSSSASDSMR 961
Query: 414 QTT 422
TT
Sbjct: 962 TTT 964
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 228 IFTLLLTNDNGC-RECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQKLSGR 389
+F LLL D+G + C ++ A DT+T +++ + +DF R +L G+
Sbjct: 11 LFKLLLIGDSGVGKSCL-------LLRFADDTYTESYISTIGVDFKIRTIELDGK 58
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -1
Query: 238 SVKMQIF-IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTM 62
+VK ++ +K L KTI E++ + V +L+ + K DQ++ I AG ++E +K
Sbjct: 25 NVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAG-EVEPTKEQ 83
Query: 61 AD 56
D
Sbjct: 84 ID 85
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 228 IFTLLLTNDNGC-RECAPASTDGGTVQQAADTHTTNHLPSTAIDFHARNQKLSGR 389
+F LLL D+G + C ++ A DT+T +++ + +DF R +L G+
Sbjct: 11 LFKLLLIGDSGVGKSCL-------LLRFADDTYTESYISTIGVDFKIRTIELDGK 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,060,308
Number of Sequences: 27780
Number of extensions: 247602
Number of successful extensions: 727
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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