Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10b11
         (931 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    29   0.15 
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    28   0.35 
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    26   1.9  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    24   5.7  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    24   5.7  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    24   5.7  
AY345586-1|AAR09143.1|  427|Anopheles gambiae myosuppressin rece...    23   10.0 
AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.         23   10.0 
AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.         23   10.0 
AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.         23   10.0 

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 29.5 bits (63), Expect = 0.15
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 368 CWPPNALLCKC--CCCSNYWCVPADWCTASAKTCRP 469
           C  P+   C C  C C   W  PA  C AS +TC P
Sbjct: 603 CSGPDHGRCVCGQCECREGWTGPACDCRASNETCMP 638


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 878 ACLLIKDDKNNPESVTREHCLIDNDIYDLSKNTWNCR 768
           ACL  +D+    E  T+  C+   + + L K+  NCR
Sbjct: 117 ACLAQRDEFREQEKFTKSECVNIRNNFHLPKSNRNCR 153


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
 Frame = +2

Query: 332 CSC*NLC--IATSPCWPPNALLCKC--CCCSNYWCVPADWCTASAKTCR 466
           C C N C  I  S C  P+  +C C  C C + W      CT     C+
Sbjct: 557 CEC-NECATIDGSICGGPDHGICTCGTCSCFDSWSGDNCECTTDTTGCK 604


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 538 PWPRWTSV 515
           PWPRWT V
Sbjct: 591 PWPRWTGV 598


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 538 PWPRWTSV 515
           PWPRWT V
Sbjct: 591 PWPRWTGV 598


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 538 PWPRWTSV 515
           PWPRWT V
Sbjct: 477 PWPRWTGV 484


>AY345586-1|AAR09143.1|  427|Anopheles gambiae myosuppressin
           receptor protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 10.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 110 TKSIWRPIRLQPWK*CRSDWCRRRQTWC 193
           T SIW  + L  W+     + +R + WC
Sbjct: 143 TISIWLTVTLAIWRYIAVAYPQRNRQWC 170


>AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 10.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 228 PTKKQSHNHHGEHQVWRRRHQ 166
           P+    H HH  H   RRR +
Sbjct: 21  PSASTKHRHHSRHHHRRRRER 41


>AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 10.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 228 PTKKQSHNHHGEHQVWRRRHQ 166
           P+    H HH  H   RRR +
Sbjct: 21  PSASTKHRHHSRHHHRRRRER 41


>AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 10.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 228 PTKKQSHNHHGEHQVWRRRHQ 166
           P+    H HH  H   RRR +
Sbjct: 21  PSASTKHRHHSRHHHRRRRER 41


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 990,948
Number of Sequences: 2352
Number of extensions: 20487
Number of successful extensions: 54
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 101295495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)