Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10b11
         (931 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022481-1|AAY54897.1|  163|Drosophila melanogaster IP06044p pro...    31   3.0  
AE013599-2368|AAF57937.2|  163|Drosophila melanogaster CG6435-PA...    31   3.0  
BT022757-1|AAY55173.1| 1257|Drosophila melanogaster LD10349p pro...    29   9.1  
AY070977-1|AAL48599.1|  308|Drosophila melanogaster RE07468p pro...    29   9.1  
AY060994-1|AAL28542.1|  623|Drosophila melanogaster HL01216p pro...    29   9.1  
AF195189-1|AAF27818.1|  229|Drosophila melanogaster yippee inter...    29   9.1  
AF145313-1|AAF08394.1|  308|Drosophila melanogaster 26S proteaso...    29   9.1  
AE014134-2292|AAF53254.1| 1257|Drosophila melanogaster CG16974-P...    29   9.1  
AE014134-869|AAF52215.1|  308|Drosophila melanogaster CG18174-PA...    29   9.1  

>BT022481-1|AAY54897.1|  163|Drosophila melanogaster IP06044p
           protein.
          Length = 163

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 485 SSTFLSDDTFLLMPCTNPPAHTSNCYNNSIYKEGRWVANTDSSQCIDFSNYKEL 324
           + T LS+D F    C N P   +N   N ++K G+     +   C+DF    +L
Sbjct: 71  TDTALSEDAFT--NCVNQPHCAANTVQNYMFKHGQDCNGDEHIDCLDFGALHKL 122


>AE013599-2368|AAF57937.2|  163|Drosophila melanogaster CG6435-PA
           protein.
          Length = 163

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 485 SSTFLSDDTFLLMPCTNPPAHTSNCYNNSIYKEGRWVANTDSSQCIDFSNYKEL 324
           + T LS+D F    C N P   +N   N ++K G+     +   C+DF    +L
Sbjct: 71  TDTALSEDAFT--NCVNQPHCAANTVQNYMFKHGQDCNGDEHIDCLDFGALHKL 122


>BT022757-1|AAY55173.1| 1257|Drosophila melanogaster LD10349p
           protein.
          Length = 1257

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 31  LRFLTIQYKNKITINTITKVAT*PNMNEVNLAAN 132
           LR+L++Q   K+T    T  A  PN+ E+ LA N
Sbjct: 478 LRYLSVQQNRKLTYLPATLFANTPNIRELLLAEN 511


>AY070977-1|AAL48599.1|  308|Drosophila melanogaster RE07468p
           protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 11/47 (23%), Positives = 29/47 (61%)
 Frame = +3

Query: 513 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 653
           QT  +LGH     VQ +++ ++   + +++++++     ++LLN+H+
Sbjct: 174 QTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHK 220


>AY060994-1|AAL28542.1|  623|Drosophila melanogaster HL01216p
           protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 31  LRFLTIQYKNKITINTITKVAT*PNMNEVNLAAN 132
           LR+L++Q   K+T    T  A  PN+ E+ LA N
Sbjct: 200 LRYLSVQQNRKLTYLPATLFANTPNIRELLLAEN 233


>AF195189-1|AAF27818.1|  229|Drosophila melanogaster yippee
           interacting protein 5 protein.
          Length = 229

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 11/47 (23%), Positives = 29/47 (61%)
 Frame = +3

Query: 513 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 653
           QT  +LGH     VQ +++ ++   + +++++++     ++LLN+H+
Sbjct: 95  QTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHK 141


>AF145313-1|AAF08394.1|  308|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p37B protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 11/47 (23%), Positives = 29/47 (61%)
 Frame = +3

Query: 513 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 653
           QT  +LGH     VQ +++ ++   + +++++++     ++LLN+H+
Sbjct: 174 QTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHK 220


>AE014134-2292|AAF53254.1| 1257|Drosophila melanogaster CG16974-PA
           protein.
          Length = 1257

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 31  LRFLTIQYKNKITINTITKVAT*PNMNEVNLAAN 132
           LR+L++Q   K+T    T  A  PN+ E+ LA N
Sbjct: 478 LRYLSVQQNRKLTYLPATLFANTPNIRELLLAEN 511


>AE014134-869|AAF52215.1|  308|Drosophila melanogaster CG18174-PA
           protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 11/47 (23%), Positives = 29/47 (61%)
 Frame = +3

Query: 513 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 653
           QT  +LGH     VQ +++ ++   + +++++++     ++LLN+H+
Sbjct: 174 QTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHK 220


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,971,968
Number of Sequences: 53049
Number of extensions: 935149
Number of successful extensions: 3838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3786
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4587341472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)