Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10b02
(501 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292369-1|CAL23181.1| 408|Tribolium castaneum gustatory recept... 25 0.50
EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine hydroxy... 24 0.67
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 24 0.88
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 23 2.0
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 23 2.0
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 23 2.0
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 23 2.0
EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine vasopre... 21 8.2
AM292341-1|CAL23153.2| 393|Tribolium castaneum gustatory recept... 21 8.2
AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less prot... 21 8.2
>AM292369-1|CAL23181.1| 408|Tribolium castaneum gustatory receptor
candidate 48 protein.
Length = 408
Score = 24.6 bits (51), Expect = 0.50
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 112 FIHLQLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNF 291
F +L+N++L +N + +GL+ LN + ++ +I N + F V+ + +F
Sbjct: 316 FCKKKLENYSLQLINHRVVFTAMGLYVLNMEHFFSVKCSIQSESLLNDILFPVAGFISDF 375
>EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine
hydroxylase protein.
Length = 532
Score = 24.2 bits (50), Expect = 0.67
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 138 HTLKGECRHMLLHHWPFLFESS 203
HT + +C H LL H P L + S
Sbjct: 352 HTPEPDCIHELLGHMPLLADPS 373
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 23.8 bits (49), Expect = 0.88
Identities = 19/88 (21%), Positives = 36/88 (40%)
Frame = -1
Query: 489 SVLSRVVLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSM 310
S +S V+ K F+ S + H+ HI R + S + ++ KS+
Sbjct: 542 SHVSAVLTCKVCDQAFSSLKELSNHMVKNSHYK--EHIMRSITESGGRRRQTREKRKKSL 599
Query: 309 PIRKDDEVQVVRGHYKGQQVGKVMQVYR 226
P+RK E++ + +K ++ R
Sbjct: 600 PVRKLLELERAQHEFKNGDSSSLLDKMR 627
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -2
Query: 86 EQRADWLHLAKTRVNTPRKLPQPW 15
++ A +H R+ P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668
Score = 21.0 bits (42), Expect = 6.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 184 GQWCNSICRHSP 149
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -2
Query: 86 EQRADWLHLAKTRVNTPRKLPQPW 15
++ A +H R+ P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668
Score = 21.0 bits (42), Expect = 6.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 184 GQWCNSICRHSP 149
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -2
Query: 86 EQRADWLHLAKTRVNTPRKLPQPW 15
++ A +H R+ P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668
Score = 21.0 bits (42), Expect = 6.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 184 GQWCNSICRHSP 149
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -2
Query: 86 EQRADWLHLAKTRVNTPRKLPQPW 15
++ A +H R+ P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668
Score = 21.0 bits (42), Expect = 6.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 184 GQWCNSICRHSP 149
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
>EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine
vasopressin receptor protein.
Length = 403
Score = 20.6 bits (41), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 183 PFLFESSQCIQQTFYDTPASLCQPVGLCS 269
P+L SS + T D ++C P+ CS
Sbjct: 124 PYL--SSYVLMATAIDRHQAICYPLTYCS 150
>AM292341-1|CAL23153.2| 393|Tribolium castaneum gustatory receptor
candidate 20 protein.
Length = 393
Score = 20.6 bits (41), Expect = 8.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 47 VNTPRKLPQPWRPLT 3
+ TP KLP W+ LT
Sbjct: 102 LTTPFKLPYFWKMLT 116
>AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less
protein.
Length = 312
Score = 20.6 bits (41), Expect = 8.2
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = -1
Query: 420 RRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVK 316
+R+ RH + + R ++P S Q FN +
Sbjct: 275 QRRTHTRHTTTSHNTRGTPRTTPASSRCGQLFNTE 309
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,235
Number of Sequences: 336
Number of extensions: 2518
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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