Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a24
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    28   1.8  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   2.3  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    26   5.4  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.4  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   7.1  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    25   9.4  

>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -3

Query: 547 ARRQHVRHQAQY*TRIQNASVGPHVCA*QQTANVF-VS*RMVSVATLQSGLSQKRIFDVG 371
           ARRQ  R QA++  R  + S+G +  + Q ++N+F  S R   +       ++K ++D  
Sbjct: 173 ARRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTI 232

Query: 370 ISARGRVRFGQHSHNRRGANSNSR 299
               G  R G  S  +   +++SR
Sbjct: 233 SEDDGLKRGGSVSKLKPTFSNDSR 256


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 297 SFVYDSLQELHEMGCVLVLWSYGSRDHVAHSMRNADLEGYF 175
           S+ +  ++E      V +L+ Y ++  VA  +RN D+EG +
Sbjct: 93  SYTHQLVKEADGSEFVYILFPYFAKGSVAQVIRNCDIEGSY 133


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 318 EQIQIRDSFVYDSLQELHEMGCVLVLWSYGSRDHVAHSMRNAD 190
           +QI  +   V  SLQ++ + G V+ L S+    + AH++ NA+
Sbjct: 22  DQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENAN 64


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 755 RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFLN 633
           R K N ++  + TP  +D+     S+ T+NTL   ++S NF N
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQN 328


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 352 HDHVRKSPRQRFAFERDHFVVWQQKPFFKK 441
           H HVR+ P      E D F  W  + +++K
Sbjct: 267 HIHVRRFPISEIPTEEDQFTDWLYQRWYEK 296


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 732 LRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 574
           + L D  +   ++ + +Y  + ++     K  + +  +F  DP+L + IEN Y
Sbjct: 352 IHLGDRDVPNALMFIDKYRQVPHILAPLVKVLQQL--EFLRDPYLVQYIENEY 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,608
Number of Sequences: 5004
Number of extensions: 76313
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)