Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a22
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899...    41   2e-04
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315...    27   2.8  
12_01_0950 - 9463148-9464358,9465326-9465644                           27   5.0  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    26   6.6  
03_02_0536 - 9284079-9286034                                           26   8.7  
01_07_0044 - 40701286-40701408,40701642-40701758,40702406-407024...    26   8.7  

>05_06_0102 - 25589011-25589181,25589269-25589496,25589589-25589933,
            25590406-25590777,25590957-25591049,25591150-25591401,
            25592019-25593224
          Length = 888

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
 Frame = -3

Query: 338  ALIQECLESVPTKDISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRH 159
            +LI++C+ SV   ++    SS    Y  RL+   + LLE   H+E +L W+  L     +
Sbjct: 781  SLIKKCIFSVDPSNVRAICSSTPLKYLQRLIEAFSDLLESCPHLEFILLWSQELCKIHGN 840

Query: 158  KFPPS------ALLAVEKVLTVKYSQLSKICDFNKYTIRCIKTVG 42
                +      AL + +K +T  +  L+  C  N+Y ++ + + G
Sbjct: 841  YIQQNSRALLPALKSFQKSITRIHQDLADTCSSNEYMLKYLCSSG 885


>08_01_0359 +
           3152483-3152857,3154493-3154855,3155133-3155211,
           3155473-3155879,3156342-3156497,3156728-3156895,
           3156991-3157131,3157739-3157966,3158063-3158176,
           3158293-3158448
          Length = 728

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 293 SLTVSSLDEDYGDRLLSTIARLLEDSRHVE 204
           ++T++ L  D  D+L  T +RL  D RH+E
Sbjct: 628 AITLNELSPDLQDKLPPTDSRLRPDQRHLE 657


>12_01_0950 - 9463148-9464358,9465326-9465644
          Length = 509

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 121 TFSTASSALGGNLCLPVDTSAV 186
           TF+T  S  G + C+PVD S V
Sbjct: 318 TFTTKVSDFGASRCIPVDQSGV 339


>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
            25826468-25827080,25827735-25827775,25830549-25831191,
            25832595-25834012,25834110-25834251,25834415-25834522,
            25835346-25835558,25835643-25835753,25836099-25836293,
            25836555-25836695,25836835-25836909
          Length = 1806

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 335  LIQECLESVPTKDISLTVSS 276
            +IQ+C+E VPT+ I   VS+
Sbjct: 1595 VIQKCIECVPTEHIGFVVSA 1614


>03_02_0536 - 9284079-9286034
          Length = 651

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 233 RLLEDSRHVEQLLHWTTALVSTGRHKFPPSALLAVEKVLTVKYSQLSKICD 81
           R+L    H++QLL    A   TG  K     L+A+ +++   +   + IC+
Sbjct: 234 RVLARMHHLQQLLDRFLACRPTGGAKHSRMVLVALYQIVRESFQLYADICE 284


>01_07_0044 -
           40701286-40701408,40701642-40701758,40702406-40702498,
           40702598-40702717,40702932-40703048,40703202-40703297,
           40703395-40703544,40703916-40704070,40704156-40704196,
           40704275-40704357,40704827-40705264
          Length = 510

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = -3

Query: 263 YGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRHKFPPSALLAVEKVLTVKYSQLSKIC 84
           +G   +S+ AR+ E +  +         +V +   K     LLA EK +     ++S+I 
Sbjct: 104 FGGSSVSSAARMREVAGLILAFPEERPVVVLSAMGKTTNLLLLAGEKAVGCGVIRVSEIE 163

Query: 83  DFNKYTIRCIKTVGDVVLKREEVEPM 6
           ++N      IKTV ++ L R  +  M
Sbjct: 164 EWNLIKDLHIKTVEELALPRSVIHTM 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,102,937
Number of Sequences: 37544
Number of extensions: 131043
Number of successful extensions: 436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)