Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a21
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z82069-5|CAB04906.2|  739|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine rece...    29   5.4  
U88169-13|AAO12405.1|  148|Caenorhabditis elegans Hypothetical p...    29   5.4  
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    28   9.5  
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    28   9.5  
AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = -2

Query: 545 LLKKLIKK-----RPATLFYFCATPQILSSSKALDLKKY*TNKIKYWRQTKSSFTDFACK 381
           LL  +IKK     + A LF+ C T  +LS +  L L     + +K  R + +    FA  
Sbjct: 132 LLAGVIKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNSSTVLQSFAII 191

Query: 380 RVVIHFIIIKCIVLYIHMCI 321
             V HFI    ++  +++ I
Sbjct: 192 AWVDHFIGFALLIFVMYLAI 211


>Z82069-5|CAB04906.2|  739|Caenorhabditis elegans Hypothetical
           protein W04A8.6 protein.
          Length = 739

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 257 MFKI*KKYHNKKNSSAISME*TSLKSI*K--NRTVYANAKQNAPLITK 120
           MFK  KK++NK+N  A+S    SLKS     N +VY    Q   L  K
Sbjct: 204 MFKPSKKHNNKENMPAVSFASGSLKSKKSALNESVYVGEPQKIDLRLK 251


>U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 32 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 734 VPQVVSLHFRILNLNLGFFQ 793
           VP+V+S++ RI+N+ LGF Q
Sbjct: 65  VPRVISINLRIVNIYLGFSQ 84


>U88169-13|AAO12405.1|  148|Caenorhabditis elegans Hypothetical
           protein T03F1.12 protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 109 ATFHFVIKGAFCLAFA*TVRFF*IDFNEVYSIEIAEEF 222
           A  H V +   CL FA TV FF + F  +Y+  +  +F
Sbjct: 71  ALSHLVQRAKQCLDFACTVHFFHLIFTTIYNHALPTQF 108


>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform b protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 374 VIHFIIIKCIVLYIHMCILRDEWL 303
           + HF+I   +VLY  +C L  EWL
Sbjct: 797 ISHFVIWGSLVLYFLVCFLLYEWL 820


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 2, isoform a protein.
          Length = 1222

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 374  VIHFIIIKCIVLYIHMCILRDEWL 303
            + HF+I   +VLY  +C L  EWL
Sbjct: 968  ISHFVIWGSLVLYFLVCFLLYEWL 991


>AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical
           protein C52E2.8 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 793 LKEAEIQVENSKMQADNLGHTSRSLIHSSDLVYDLQNAQLNV 668
           L E E +  N+K+  +N       +   + LVYD++N  LNV
Sbjct: 321 LDEIEKRFRNAKIDQENYDQMKLDIGIITSLVYDMKNRGLNV 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,794,747
Number of Sequences: 27780
Number of extensions: 364918
Number of successful extensions: 919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)