Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a20
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     32   0.70 
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     32   0.70 
06_03_0757 + 24267599-24268882                                         29   5.0  
01_06_0203 - 27487469-27489787                                         28   8.7  

>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -2

Query: 859 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 680
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 679 LSTLEMTQ 656
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -2

Query: 859 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 680
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 679 LSTLEMTQ 656
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 708 NWRSANTWLCSAPWK*PSRCWK 643
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 280 DYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSL 137
           DYD +L  +S+   + +  +T   IVE  Y+H    KN G+ EY   L
Sbjct: 249 DYDGNLRIYSLDASDGSWTVTWQAIVEMHYVHGMCGKN-GICEYLPEL 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,203,206
Number of Sequences: 37544
Number of extensions: 411099
Number of successful extensions: 1099
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)