Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10a17
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 237 4e-63
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 48 4e-06
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 29 3.4
AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin... 28 5.9
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 27 7.8
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.8
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.8
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.8
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 27 7.8
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 27 7.8
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 27 7.8
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 27 7.8
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 27 7.8
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 27 7.8
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 27 7.8
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 27 7.8
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 237 bits (580), Expect = 4e-63
Identities = 109/146 (74%), Positives = 130/146 (89%)
Frame = -1
Query: 482 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 303
MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 123
+LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I IA+IMR RS
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120
Query: 122 MARYLSGSVKEILGTAQSVGCXCGGQ 45
MA+ L G+VKEILGTAQSVGC GQ
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQ 146
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -1
Query: 137 MRNRSMARYLSGSVKEILGTAQSVGCXCGGQ 45
MR RSMA+ L G+VKEILGTAQSVGC GQ
Sbjct: 1 MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQ 31
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 55 QXHPTDCAVPRISFTEPERYRAIDL 129
+ HPT CAV F +P +Y IDL
Sbjct: 289 ENHPTACAVSLFLFYDPYQYYLIDL 313
>AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin
protein 73 protein.
Length = 577
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 309 DLETLPVTCGLGNVITHLFRRQTKRTDFR 395
D ++LP+ C LG V+ + ++ TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 201 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 326
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 201 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 326
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 201 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 326
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 201 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 326
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 201 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 326
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -1
Query: 362 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 192
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 191 IKHNGNISLEDVIGIAKIMRNRSM 120
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -1
Query: 362 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 192
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 191 IKHNGNISLEDVIGIAKIMRNRSM 120
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -1
Query: 362 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 192
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 191 IKHNGNISLEDVIGIAKIMRNRSM 120
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -1
Query: 362 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 192
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 191 IKHNGNISLEDVIGIAKIMRNRSM 120
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -1
Query: 362 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 192
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 191 IKHNGNISLEDVIGIAKIMRNRSM 120
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -1
Query: 362 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 192
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 191 IKHNGNISLEDVIGIAKIMRNRSM 120
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 201 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 326
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,272
Number of Sequences: 27780
Number of extensions: 299898
Number of successful extensions: 785
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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