Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a15
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    29   0.76 
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    26   5.3  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   9.3  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    25   9.3  

>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 238 FLWYKLARKLIEHERQMDRCVTPSTVQINLYD-DNED 131
           FLW+  + K ++ E+++D  VT     ++LY  DNE+
Sbjct: 52  FLWFGFSSKNVKFEQKLDLAVTCLDTIVSLYAVDNEE 88


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -1

Query: 220 ARKLIEHERQMDRCVTPS--TVQINLYDDNEDYLNCFDCCIVDCNINDMNRCPDLQIDVY 47
           A K+I+H   ++  +  S  +V  + Y    DY   +  C++  +  D+++C   ++   
Sbjct: 143 ASKIIDHIDYVESLIHSSYYSVSADYYKAKADYAQYYRHCLLYLSCIDLDKCSHTELVER 202

Query: 46  LDDNIITFVFIFVYN 2
             D  +  +   +YN
Sbjct: 203 AVDLSVAAILGDIYN 217


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 508 LTTRVKCRLLRDNNVEDYLKLTPANYHF 425
           + T++   +L D  + + +KL P NY+F
Sbjct: 48  VATQIPEDILNDKAINEAIKLLPQNYNF 75


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = -1

Query: 577 LPLEIIDTILQYL 539
           LP+E+ID+++QYL
Sbjct: 34  LPVEVIDSVMQYL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,409
Number of Sequences: 5004
Number of extensions: 51403
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)