Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a15
         (646 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.6  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   4.7  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   6.3  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   8.3  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 580  RLPLEIIDTILQYLDPISHAKVVGLTTRVKCR 485
            ++P   +D I Q +DP +  KV  +     CR
Sbjct: 959  QVPFRCVDEINQGMDPTNERKVFNMLVEETCR 990



 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 490 CRLLRDNNVEDYLKLTPANYHFTTDQFIC 404
           C+ L  + V+D+ K+ P      T   +C
Sbjct: 134 CQFLPQDRVQDFTKMNPRELLLNTQSSVC 162


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 592 AKRIRLPLEIIDTILQYLDPISH 524
           AKR RL   ++D+IL+Y  P+ H
Sbjct: 795 AKR-RLLASVVDSILRYAAPVWH 816


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 587 FCSCALCNARHPNNNC 634
           +  C LCN +HP + C
Sbjct: 341 YLKCPLCNEQHPLHVC 356


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 455 IIFNVVVAQKSAFYT 499
           IIFN+ + +K+ FYT
Sbjct: 229 IIFNITLRRKTLFYT 243


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,653
Number of Sequences: 2352
Number of extensions: 14406
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)