Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a10
         (221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    26   0.77 
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    24   2.4  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    23   4.1  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    23   4.1  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   5.5  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    23   5.5  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    23   7.2  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    22   9.5  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    22   9.5  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 209 QEKLYCNIESFFSNEFDKFLSH 144
           +EK    +  FF NEF +FL H
Sbjct: 377 EEKSTFTLRQFFHNEFPRFLPH 398


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 107 FYEIAQILLQLFVXIENLVICNRMRDWITIC 15
           FY + +  + +FV   +++    M DWI +C
Sbjct: 152 FYTMCRSSILIFVFFFSVIFRIEMFDWILLC 182


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 194 CNIESFFSNEFDK 156
           C IE  FS EFDK
Sbjct: 418 CGIEGAFSEEFDK 430


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 142 LWDK--NLSNSFEKKLSMLQY 198
           +W+K   L N FEKKLS L +
Sbjct: 57  VWEKPEELMNDFEKKLSKLAW 77


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 41  DYK*LNFQXLQITVIISVQFHKTTNYKRLN 130
           +Y  LN   +   V+I +  HK+T  K+LN
Sbjct: 823 NYGFLNEDIIVKIVLILIDLHKSTYSKKLN 852


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +2

Query: 104 KTTNYKRLNPNRFCGIKICQI 166
           K    K ++P+ FC +++C +
Sbjct: 429 KNLEAKTVSPSNFCALEVCAL 449


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 65  IENLVICNRMRDWITICFFF 6
           +E L+  N++ DW+ +  FF
Sbjct: 574 METLLASNKVTDWVKLSEFF 593


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 149 IKICQIHLKKNFQCYNTAFLVNS 217
           I+ C++ +  N +CY    L++S
Sbjct: 100 IQACELSVADNMECYEWMDLISS 122


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 56  NFQXLQITVIISVQFHKTTNYKRL 127
           NF+ LQ   ++S+Q ++ T ++ L
Sbjct: 187 NFEKLQKLSLLSIQSNRITQFENL 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,159
Number of Sequences: 5004
Number of extensions: 11253
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)