Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a09
         (894 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   4.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.6  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   7.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.9  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   9.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 766 YPDSDFSDEDQSPL 725
           Y D +FSD++ SPL
Sbjct: 11  YSDDNFSDDESSPL 24


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 766 YPDSDFSDEDQSPL 725
           Y D +FSD++ SPL
Sbjct: 11  YSDDNFSDDESSPL 24


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 766 YPDSDFSDEDQSPL 725
           Y D +FSD++ SPL
Sbjct: 11  YSDDNFSDDESSPL 24


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 766 YPDSDFSDEDQSPL 725
           Y D +FSD++ SPL
Sbjct: 11  YSDDNFSDDESSPL 24


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 703 ADHLRKVTNKLNNGQLLELYGLF 635
           A HL+K T  +N   L +L+G F
Sbjct: 410 AQHLQKTTTFMNYTDLHDLWGEF 432


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 516 SLASSLGISLRFFQASH 566
           SLA S+G+ L  F A+H
Sbjct: 801 SLAHSVGVFLTIFNAAH 817


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 280 GLTALHWAADRNAI 239
           GL   H+AADRN+I
Sbjct: 16  GLFVPHFAADRNSI 29


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 842 VETFQCVNLLIS 877
           VE+F CVN L+S
Sbjct: 342 VESFVCVNTLVS 353


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory
          receptor candidate 35 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 2  NYINAKLISTFQNFLYFSIS 61
          N++   L+S F+N++ F  S
Sbjct: 36 NFVKTYLVSDFENYVTFFCS 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,768
Number of Sequences: 336
Number of extensions: 4483
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)