Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10a09
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 75 2e-14
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 58 1e-09
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 48 1e-06
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 46 7e-06
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 46 1e-05
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 43 7e-05
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 39 8e-04
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 37 0.004
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 33 0.055
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 29 1.2
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 28 2.1
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 28 2.1
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 27 3.6
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 27 4.8
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 27 4.8
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 27 4.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 4.8
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 4.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.3
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc... 26 6.3
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 8.3
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 8.3
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 74.5 bits (175), Expect = 2e-14
Identities = 34/77 (44%), Positives = 49/77 (63%)
Frame = -3
Query: 727 LDSLFNKAADHLRKVTNKLNNGQLLELYGLFKQGTEGQCNTPKPGWLDGKGRRKWEAWKN 548
+ S F +AA ++++ N+ +LL+LY LFKQ T G NT KPG LD KG+ KW AW+
Sbjct: 1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKPGLLDLKGKFKWNAWEE 60
Query: 547 LKDMPSEEAKEKYIALL 497
LK E+A +YI+ +
Sbjct: 61 LKGKSKEDAASEYISFV 77
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 58.4 bits (135), Expect = 1e-09
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = -3
Query: 334 VKELLIKKPELKYEKDEDGLTALHWAADRNAINALSAALSGGCPIDAVDECGQTALHYAV 155
V+ L K PEL +KD G T LH AA I + +S P++ D G T LH+A+
Sbjct: 123 VQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFAL 182
Query: 154 SCGHVESTKILTKAGA-TLLEDEEGNTPLDLATD 56
+ GH + L +AGA TL +D E +T L++ D
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALEVCPD 216
Score = 37.1 bits (82), Expect = 0.003
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Frame = -3
Query: 322 LIKKPELKY-EKDEDGLTALHWAADRNAI-NALSAALSGGCPIDAV--DECGQTALHYAV 155
L+K+P +K EKDE G T L + + ++ + + L +D GQT LHYA
Sbjct: 56 LLKQPNIKPDEKDEAGWTPLMISINNRSVPDNVIEELINRSDVDPTITTRGGQTCLHYAA 115
Query: 154 SCGHVESTKILTKAGATLL--EDEEGNTPLDLA 62
G + ++L L+ +D +G TPL A
Sbjct: 116 GKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRA 148
Score = 33.1 bits (72), Expect = 0.055
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -3
Query: 373 SLLDAAREDCGERVKELLIKK-PELKYEKDEDGLTALHWAADRNAINALSAAL-SGGCPI 200
SL A E+C E E I+ P D+D T LHWA +N + L
Sbjct: 5 SLGKAIEENCPEEYVEQAIQNDPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKP 64
Query: 199 DAVDECGQTALHYAVS 152
D DE G T L +++
Sbjct: 65 DEKDEAGWTPLMISIN 80
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 202 IDAVDECGQTALHYAVSCGHVESTKILTKAGATLLE--DEEGNTPL 71
++AVD+ +T LH+A S G V + L K + DE G TPL
Sbjct: 30 LNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPL 75
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 48.4 bits (110), Expect = 1e-06
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Frame = -3
Query: 373 SLLDAAREDCGERVKELLIKKPELKYEKDEDGLTALHWAADRNAINALSAALSGGCPIDA 194
SL AA + + VK L+ + DE G TALHWAA I L G ++A
Sbjct: 3 SLFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNA 62
Query: 193 VDECGQTA-LHYAVSCGHVESTKILTKAGA-TLLEDEEGNTPLDLA 62
+ Q A +H+A G V++ L + GA LL+D++G L LA
Sbjct: 63 IGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLA 108
Score = 33.1 bits (72), Expect = 0.055
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -3
Query: 292 KDEDGLTALHWAADRNAINALSAALSGGCPIDAVDECGQTALHYAVSCGHVESTKILTKA 113
+D+ T L WA+ + L G + A DE T LH+++ G+++ K++ K
Sbjct: 130 RDDQQHTPLMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKE 189
Query: 112 G 110
G
Sbjct: 190 G 190
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 268 LHWAADRNAINALSAALSGGCPIDAVDECGQTALHYAVSCGHVESTKILTKAGATL-LED 92
+HWAA R ++ + + G D+ G LH AV L ++ L D
Sbjct: 72 IHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHAASPLLVVYLLHLDISVDLRD 131
Query: 91 EEGNTPL 71
++ +TPL
Sbjct: 132 DQQHTPL 138
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 46.0 bits (104), Expect = 7e-06
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -3
Query: 259 AADRNAINALSAALSGGCPIDAVDECGQTALHYAVSCGHVESTKILTKAGATL-LEDEEG 83
AA + + L G +A DE G T +H AVS GH + KIL + G + + D++G
Sbjct: 11 AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70
Query: 82 NTPLDLATDTEI 47
TPL + EI
Sbjct: 71 ETPLFVCEKLEI 82
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 45.6 bits (103), Expect = 1e-05
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = -3
Query: 370 LLDAAREDCGERVKELLIKKPELKYEKDEDGLTALHWAADRNAINALSAALS--GGCPID 197
L+ A R E + E++ K P+ +DE+G + LH A+ I + + I+
Sbjct: 6 LIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVIN 65
Query: 196 AVDECGQTALHYAVSCGHVESTKILTKAG 110
A +E G TA+H+A GH E K+L +AG
Sbjct: 66 AQNESGNTAMHWAALNGHAEICKLLLEAG 94
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 42.7 bits (96), Expect = 7e-05
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = -3
Query: 289 DEDGLTALHWAADRNAINALSAALSGGCPIDAVDECGQTALHYAVSCGHVE-STKILTKA 113
+E G + LH A NA + + GC ++ D G T LHYA H + +L+
Sbjct: 859 NESGRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNG 918
Query: 112 GATLLEDEEGNTPLDLATDTEIKKILEGAD 23
+ G P+DL++ IK + + A+
Sbjct: 919 AKPDVIGASGKKPIDLSSSEPIKLVFKEAN 948
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 39.1 bits (87), Expect = 8e-04
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = -3
Query: 289 DEDGLTALHWAADRNAINALSAALSGGCPIDAVDECGQTAL 167
DEDG TALHWAA + + A L G + AV+ QT+L
Sbjct: 234 DEDGHTALHWAAAMGNLEMMHALLQAGANVVAVNYLQQTSL 274
Score = 33.5 bits (73), Expect = 0.041
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 193 VDECGQTALHYAVSCGHVESTKILTKAGATLL 98
+DE G TALH+A + G++E L +AGA ++
Sbjct: 233 IDEDGHTALHWAAAMGNLEMMHALLQAGANVV 264
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 193 VDECGQTALHYAVSCGHVESTKILTKAGATL 101
+D+ G T+LH+A S GH+E K+L +A A +
Sbjct: 244 IDDDGHTSLHWACSMGHIEMIKLLLRANADI 274
Score = 32.7 bits (71), Expect = 0.072
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Frame = -3
Query: 400 EPDLVHNELSLLDAAREDCGERVKELLIKKP---ELKYEKDEDGLTALHWAADRNAINAL 230
E L E SLLD R+ L P ++ D+DG T+LHWA I +
Sbjct: 205 EAPLDKYEESLLDFFLHPEEGRIPSFLYSPPPDFQVNSVIDDDGHTSLHWACSMGHIEMI 264
Query: 229 SAALSGGCPIDAVDECGQTALHYAV 155
L I + QT L +V
Sbjct: 265 KLLLRANADIGVCNRLSQTPLMRSV 289
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 33.1 bits (72), Expect = 0.055
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -3
Query: 298 YEKDEDGLTALHWAADRNAINALSAALSGGCPIDA-VDECGQTALHYAVSCGHVESTKIL 122
Y +D LT++ + +AL A LS +D +DE G ALH+A + + + L
Sbjct: 317 YHTSKDILTSIFLDVNFADSSALEAKLSDSLDLDVPIDELGHAALHWAAAVAKMPLLQAL 376
Query: 121 TKAGATLLEDE-EGNTPL 71
GA L G T L
Sbjct: 377 IHKGANPLRGNLTGETAL 394
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 205 PIDAVDECGQTALHYAVSCGHVESTKILTKAGATLLEDE-EGNTPLDLATDTEIKKILEG 29
PI+ VD+ + L A CGH K L + GA D +G L A + I+++L
Sbjct: 78 PINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERDTFQGERCLYGALNDNIRRMLLS 137
Query: 28 AD 23
D
Sbjct: 138 YD 139
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Frame = -3
Query: 547 LKDMPSEEAKEKYIALLKKYDPDWS----GTPQKT------NIDTKETWVAVSSMRYSP 401
L+D ++ +E+ +++K +DPD G P KT + DTKE+ + RY P
Sbjct: 67 LRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGP 125
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 166 HYAVSCGHVESTKILTKAGATLLEDEEGNTPLDLAT 59
HY +V+S KI+ A L DEEGN P++ T
Sbjct: 71 HYQTLRANVDSLKIIQIGLA--LSDEEGNAPVEACT 104
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 745 DEDQSPLDSLFNKAADHLRKVTNKLNNG 662
DED +D+ + ADH+R +T +++G
Sbjct: 290 DEDVDGIDTAYRVVADHVRTLTFAISDG 317
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 502 LLKKYDPDWSGTPQKTNIDT-KETWVAVSSMRYSPEPDLVHNE 377
++++YDPD++G K +I E V ++R +PE L+ NE
Sbjct: 10 IVRQYDPDYTG---KVSIQAFLEIVDDVDALRLNPEAPLLDNE 49
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/105 (22%), Positives = 47/105 (44%)
Frame = -3
Query: 625 TEGQCNTPKPGWLDGKGRRKWEAWKNLKDMPSEEAKEKYIALLKKYDPDWSGTPQKTNID 446
T G C+ KP W K R+ + ++ +E +++ + +D D+ N
Sbjct: 256 THGMCSRQKPTWF--KARKAY-----IRSQSTETSEDDDSS---SFDDDYQ------NYL 299
Query: 445 TKETWVAVSSMRYSPEPDLVHNELSLLDAAREDCGERVKELLIKK 311
+E W+A SS+ + H ++L + R+D KE +++K
Sbjct: 300 KQEPWLAHSSVNSLKDVAKFHCNITLDKSKRDDFASLEKEPILQK 344
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 4.8
Identities = 22/101 (21%), Positives = 40/101 (39%)
Frame = -3
Query: 781 EALPDYPDSDFSDEDQSPLDSLFNKAADHLRKVTNKLNNGQLLELYGLFKQGTEGQCNTP 602
E L + D+ +DED+S FN L+ + + + +G QG +
Sbjct: 145 EVLKQHLDAIQNDEDES---KHFNNVLIMLKDF-GAIFGQEFSDRHGFAAQGPRRKLMAR 200
Query: 601 KPGWLDGKGRRKWEAWKNLKDMPSEEAKEKYIALLKKYDPD 479
WL + + +W +D+ E A + L ++D D
Sbjct: 201 ARNWLLSAAIQPYHSWVYWRDVDVETAPNTILEDLMRHDKD 241
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -3
Query: 565 WEAWKNL---KDMPSEEAKEKYIALLKKYDPDWSGTPQKTNIDTK 440
WE + L KD S++ KE Y L + + PD QK + K
Sbjct: 7 WELYLALGLPKDATSDQIKESYYRLSRLFHPDRHTADQKAAAEEK 51
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 441 LVSIFVF*GVPDQSGSYF----FNKAIYFSLASSLGISLRFFQASHFLRPL 581
++S+FV G+ DQ+ +Y N+ ++ +++ + R F+A H L PL
Sbjct: 256 IISVFVNKGLVDQAAAYLKNSNLNERNLPTIYTTVWLLQRLFEAHHSLDPL 306
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 510 YFSLASSLGISLRFFQASHFLRPLPSNHPGFGVLH*PSVPCLNNPYNSKS*PLFNLFVT 686
YFS S GI+L S L+ LP+ + H P L + K+ PL +F+T
Sbjct: 2932 YFSW--STGITLVAAPQSLILQDLPTAISALKITHVDLTPSLASILTPKTAPLLRVFIT 2988
>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 759 TQIFQMKISLHWTACSIRQLTILE 688
T QMK + WTAC IR +TI++
Sbjct: 234 TDSSQMK-KIIWTACEIRSVTIIK 256
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 793 FKMAEALPDYPDSDFSDEDQSPLDSLFNKAADHLRKVTNKLNNGQLL 653
F ++E DYP S+ + PL N+A LR+V ++L + L
Sbjct: 50 FPVSEDATDYPSGTTSENESLPL----NRAPRSLREVASELAQEETL 92
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 457 SFEVYLTSQDHIFSTKQYISP*PLHW 534
SF L S ST YIS PLHW
Sbjct: 370 SFSARLQSLQDTESTNLYISNLPLHW 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,592,323
Number of Sequences: 5004
Number of extensions: 76656
Number of successful extensions: 254
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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