Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a08
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    33   0.41 
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    30   2.2  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    30   2.9  
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754...    29   3.9  
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294...    29   5.1  
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838...    29   6.7  
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12...    28   8.9  

>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -2

Query: 908 VPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNN 729
           + +E  DDD+  +++   TPE  +   + ++    L +E DI++++  D P   GD + +
Sbjct: 292 IDDEYDDDDDDDLNMRDATPEPDELDQDIVE--SDLELEGDIVESDHQDPPQKMGDPSID 349

Query: 728 RKVVDANED 702
             V + N D
Sbjct: 350 --VTEENRD 356


>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
            22061666-22061867,22062273-22062344,22062509-22062573,
            22062682-22062741,22063033-22064379,22064463-22064607,
            22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 851  PEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKV-VDANEDEYTVDGLKL 675
            PE+K DF+ A +  ++ +I    +  E ++     G+D   +KV +D  ED   +   KL
Sbjct: 1331 PEEKVDFIGASESLDSSSIADHELPDESSEKEVNMGEDEGKKKVELDDWEDAAEMSTPKL 1390

Query: 674  K 672
            +
Sbjct: 1391 E 1391


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 845 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKS 669
           Q+DD  N +    T N++ D + T     P TS    +NR      ED     G+ ++S
Sbjct: 194 QQDDLANLVDERNTENLQKDAMATSDFQQPCTS----DNRCFDQRQEDSINTVGVNIRS 248


>12_01_0819 +
           7545656-7546006,7546087-7546162,7547196-7547401,
           7547498-7547584,7547673-7547765,7548172-7548326,
           7548470-7548554,7548632-7548718,7548801-7548920,
           7549707-7549808,7549903-7550070
          Length = 509

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 264 NMNTSVDAVTKLIRLQNDVLD-MMREVDQYLNSDTPDYTIESLNAP 130
           N+    +  T+L+RL+  +L   ++  ++++N D PD+T+    AP
Sbjct: 459 NLEPKKEVATRLVRLEKKLLHGCLQAANEFIN-DLPDHTVSPCPAP 503


>11_01_0389 -
           2937242-2939476,2939556-2939666,2941254-2941450,
           2941543-2941633
          Length = 877

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 845 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKS 669
           Q+DD  N +    T N++ D + T     P TS     NR      ED     G+ ++S
Sbjct: 181 QQDDLANLVNESNTGNLQKDAMATPDFHQPCTS----ENRCFDQPQEDSINAVGVNIRS 235


>01_01_1062 +
           8381281-8381490,8382353-8382449,8382546-8382637,
           8382729-8382860,8382975-8383160,8383244-8383407,
           8383514-8383592,8384484-8384612,8385102-8385229,
           8385348-8385711
          Length = 526

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 788 DIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKIL 633
           +I+K  +TD    +GD N   +++D  E    ++ L+       Y K +KIL
Sbjct: 438 NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 489


>05_01_0018 +
           125697-126130,126231-126356,126726-126825,126950-126969,
           127118-127220,127331-127469,127577-127791,127873-128523
          Length = 595

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -2

Query: 860 LTTPEQKDDFMNAIKPFETLNIESDIIKTEQ--TDAPATSGDDNNNRKVVDANEDEYTVD 687
           L  P+   + M+ I+  +   +E    KT    ++   +SGDD NN  +    +D    D
Sbjct: 375 LENPQINREMMDLIESLQRKAVEEGDTKTSSDVSNGAESSGDDGNNEALEKGEDDSSLKD 434

Query: 686 GLKLK 672
              LK
Sbjct: 435 DGSLK 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,948,516
Number of Sequences: 37544
Number of extensions: 447051
Number of successful extensions: 1430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)