Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a08
         (909 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    24   5.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   9.7  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    23   9.7  

>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 509 LWLERNTHEFDNNTDKIL 456
           LWL +N +EF N T+ +L
Sbjct: 82  LWLCKNCNEFRNGTNSLL 99


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 689  PPCTRPRSHRPLFDYYYHRR 748
            P  T P S+   F+ YYHR+
Sbjct: 1052 PKSTFPGSNYATFEEYYHRK 1071


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 231 ALSPRPRTCSCFFFEN*IATIVRVHYTIRLNILVGAIVSAIQF 359
           AL+P+  T    F  N         Y I LN+L+  I S + F
Sbjct: 197 ALAPQILTIIILFLRNRRLRHFNAFYPICLNLLLALIASNLSF 239


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,352
Number of Sequences: 2352
Number of extensions: 20636
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 98401338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)