Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10a08
(909 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB076359-1|BAD01546.1| 298|Homo sapiens keratin associated prot... 35 0.35
BC103846-1|AAI03847.1| 127|Homo sapiens keratin associated prot... 33 1.1
BC103845-1|AAI03846.1| 127|Homo sapiens keratin associated prot... 33 1.1
AJ406942-1|CAC27581.1| 127|Homo sapiens keratin associated prot... 33 1.1
AL445189-2|CAH71699.1| 703|Homo sapiens RP11-787I22.1 protein. 32 3.3
AL390208-1|CAI16717.2| 867|Homo sapiens armadillo repeat contai... 32 3.3
AJ406936-1|CAC27575.1| 166|Homo sapiens keratin associated prot... 32 3.3
AJ406937-1|CAC27576.1| 186|Homo sapiens keratin associated prot... 31 5.8
AJ296168-1|CAC27563.1| 106|Homo sapiens keratin associated prot... 31 5.8
AB076350-1|BAD01537.1| 221|Homo sapiens keratin associated prot... 31 5.8
>AB076359-1|BAD01546.1| 298|Homo sapiens keratin associated protein
protein.
Length = 298
Score = 35.1 bits (77), Expect = 0.35
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +2
Query: 293 CTCPLYNSA*YTRRRNRICNPISCSRNW**YL*TCTFSICLYRP-AQVSIRSVKFLKFCL 469
C P+ + A Y+R + C P +C CT S C RP + VS+ +
Sbjct: 203 CCVPVCSRASYSRCQQPSCQP-AC----------CTTSCC--RPSSSVSLLCHPVCR-ST 248
Query: 470 YCCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARI-LSCWSLC 607
C + +CC P T+ Q C P + V L C A L+C+SLC
Sbjct: 249 CCVPVSSCCAP----TSSCQSSCCCPASCVSLLCRPASSRLACYSLC 291
>BC103846-1|AAI03847.1| 127|Homo sapiens keratin associated protein
4-10 protein.
Length = 127
Score = 33.5 bits (73), Expect = 1.1
Identities = 26/84 (30%), Positives = 33/84 (39%)
Frame = +2
Query: 473 CCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSCWSLC*RTLLKNLQVFSNIC 652
CCQ CC V + R C +TT C T T R C +C +T + S+ C
Sbjct: 29 CCQTTCCCPSCVVSSCCRPSC---SQTTCCQT-TCCRPSCCRPVCCQTTCRPSCGVSSCC 84
Query: 653 NTRRILI*VLSRPPCTRPRSHRPL 724
R + RP C RPL
Sbjct: 85 --RPLCCQTTCRPSCGVSSCCRPL 106
>BC103845-1|AAI03846.1| 127|Homo sapiens keratin associated protein
4-10 protein.
Length = 127
Score = 33.5 bits (73), Expect = 1.1
Identities = 26/84 (30%), Positives = 33/84 (39%)
Frame = +2
Query: 473 CCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSCWSLC*RTLLKNLQVFSNIC 652
CCQ CC V + R C +TT C T T R C +C +T + S+ C
Sbjct: 29 CCQTTCCCPSCVVSSCCRPSC---SQTTCCQT-TCCRPSCCRPVCCQTTCRPSCGVSSCC 84
Query: 653 NTRRILI*VLSRPPCTRPRSHRPL 724
R + RP C RPL
Sbjct: 85 --RPLCCQTTCRPSCGVSSCCRPL 106
>AJ406942-1|CAC27581.1| 127|Homo sapiens keratin associated protein
4.10 protein.
Length = 127
Score = 33.5 bits (73), Expect = 1.1
Identities = 26/84 (30%), Positives = 33/84 (39%)
Frame = +2
Query: 473 CCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSCWSLC*RTLLKNLQVFSNIC 652
CCQ CC V + R C +TT C T T R C +C +T + S+ C
Sbjct: 29 CCQTTCCCPSCVVSSCCRPSC---SQTTCCQT-TCCRPSCCRPVCCQTTCRPSCGVSSCC 84
Query: 653 NTRRILI*VLSRPPCTRPRSHRPL 724
R + RP C RPL
Sbjct: 85 --RPLCCQTTCRPSCGVSSCCRPL 106
>AL445189-2|CAH71699.1| 703|Homo sapiens RP11-787I22.1 protein.
Length = 703
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = -1
Query: 270 KRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTK 91
K + N D++ + + +L+++R D N + Y + S+ FL+EM++K
Sbjct: 193 KISRNEKNDSLIQNDSILESLLEVLRSEDLQTNMEAFLYCMGSIKFISGNLGFLNEMISK 252
Query: 90 KLIESNAMVFDETNKNLK 37
+E + + N+N+K
Sbjct: 253 GAVEILINLIKQINENIK 270
>AL390208-1|CAI16717.2| 867|Homo sapiens armadillo repeat
containing 2 protein.
Length = 867
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = -1
Query: 270 KRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTK 91
K + N D++ + + +L+++R D N + Y + S+ FL+EM++K
Sbjct: 358 KISRNEKNDSLIQNDSILESLLEVLRSEDLQTNMEAFLYCMGSIKFISGNLGFLNEMISK 417
Query: 90 KLIESNAMVFDETNKNLK 37
+E + + N+N+K
Sbjct: 418 GAVEILINLIKQINENIK 435
>AJ406936-1|CAC27575.1| 166|Homo sapiens keratin associated protein
4.4 protein.
Length = 166
Score = 31.9 bits (69), Expect = 3.3
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 473 CCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSCWSLC*R 613
CCQ CC V + R +CC +TT C T T R C S C R
Sbjct: 115 CCQPTCCCPSYCVSSCCRPQCC---QTTCCRT-TCCRPSCCVSRCYR 157
>AJ406937-1|CAC27576.1| 186|Homo sapiens keratin associated protein
4.5 protein.
Length = 186
Score = 31.1 bits (67), Expect = 5.8
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Frame = +2
Query: 290 NCTCPLYNSA*YTRRRNRICNPISCSRNW**YL*TCTFSICLYRPAQVSIRSVKFLKFCL 469
NC CP + T R C P C C S+C Y+P C
Sbjct: 19 NCCCP--SCCQTTCCRTTCCRPSCCKPQ-------CCQSVC-YQPT-----------CCH 57
Query: 470 YCCQIRACCVPATV*TARRQKCCAKP---RTTVCLTCTLARILSCWSLC 607
C I +CC P ++ + CC +P +TT C T C S C
Sbjct: 58 PSCCISSCCRPYCCESSCCRPCCCRPSCCQTTCCRTTCCRTTCCCPSCC 106
>AJ296168-1|CAC27563.1| 106|Homo sapiens keratin associated protein
protein.
Length = 106
Score = 31.1 bits (67), Expect = 5.8
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 473 CCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSCWSLC*R 613
CCQ CC V + R +CC +TT C T T R C S C R
Sbjct: 55 CCQPTCCCPSYCVSSCCRPQCC---QTTRCRT-TCCRPSCCVSRCYR 97
>AB076350-1|BAD01537.1| 221|Homo sapiens keratin associated protein
protein.
Length = 221
Score = 31.1 bits (67), Expect = 5.8
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 395 CTFSICLYRPAQVSIRSVKFLKFCLYCCQIRACCVPATV*TARRQKCCAKPRTTVCLTC- 571
CT S C RP+ + + YC I +CC PA+ Q C +P + V L C
Sbjct: 147 CTTSCC--RPSSSVSLLCRPVCRSTYCVPIPSCCAPAST----CQPSCCRPASCVSLLCR 200
Query: 572 -TLARILS 592
T +R+ S
Sbjct: 201 PTCSRLSS 208
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,326,985
Number of Sequences: 237096
Number of extensions: 2422407
Number of successful extensions: 11031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10992
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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