Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10a06
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 244 3e-65
AL032624-3|CAL36506.1| 232|Caenorhabditis elegans Hypothetical ... 32 0.14
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 32 0.19
AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 2.4
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 3.1
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 27 5.5
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 27 5.5
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 27 5.5
U23514-3|AAC46542.2| 421|Caenorhabditis elegans Hypothetical pr... 27 5.5
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 7.2
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 26 9.5
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 26 9.5
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 26 9.5
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 244 bits (596), Expect = 3e-65
Identities = 113/131 (86%), Positives = 123/131 (93%)
Frame = -2
Query: 395 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 216
MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60
Query: 215 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 36
V +VKKGKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 35 VAKECADLWPR 3
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>AL032624-3|CAL36506.1| 232|Caenorhabditis elegans Hypothetical
protein Y49A10A.2 protein.
Length = 232
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 336 PSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFWGHDCGHS 202
P G+ L R +R K+S ++ + + ++T GG+ WG CG +
Sbjct: 47 PQGAIFALHRDYRFKKST-EQHTKAIKEAKETLGGKLWGSQCGRA 90
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 31.9 bits (69), Expect = 0.19
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 190 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 366
+PF+ T + P A ++ R P+ P+ T AP + PT PR I P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188
Query: 367 AEPPRPLLDILLYQNFE 417
+P RP+ I Q F+
Sbjct: 189 QQPFRPIQPIQPQQPFQ 205
>AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical
protein Y66D12A.5 protein.
Length = 729
Score = 28.3 bits (60), Expect = 2.4
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = -2
Query: 344 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 177
L L G V C +D KN + + G + G+LNR M+ +T K +L
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512
Query: 176 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 93
V P +RK +RD F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 78 DYDTRIVLKVYKYSITPSERFPL 146
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 235 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 327
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 345 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 250
PG P G+ N G CD CP + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 354 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 250
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 354 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 250
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical
protein F58B3.5 protein.
Length = 917
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -2
Query: 398 KMSKRGRGGSAGAKF--RISLG---LPVGAVINCADNTGAKNLYV 279
K K+G+GG+A A I +G + VG +I C + A LYV
Sbjct: 737 KEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYV 781
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 354 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 250
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 354 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 250
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>U23514-3|AAC46542.2| 421|Caenorhabditis elegans Hypothetical
protein F48E8.7a protein.
Length = 421
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 123 TPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSVQATFDTLDS 275
T + P ++HC +F + ++F C +N P+ R SV + L S
Sbjct: 11 TLEDNGPSENEHCVETVFSDETISIFPC-YNLYPKKSLRLSVSGNSEKLKS 60
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -1
Query: 354 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 250
P PG+P G E CD CP + +P
Sbjct: 315 PGQPGAPGQQGEPGEDGESGSEGACDHCPPPRTAP 349
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 354 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 250
P PG P + + G E CD CP + +P
Sbjct: 281 PGAPGQPGQAGAPGQDGDSGSEGACDHCPPPRTAP 315
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 354 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 250
P PG P + + G E CD CP + +P
Sbjct: 277 PGAPGQPGQAGAPGQDGDSGSEGACDHCPPPRTAP 311
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 88 PALSSKYINTPSRLLNGFRCLMTTAG 165
PA+ YINT ++N R ++ T G
Sbjct: 203 PAVDMNYINTKQHMINSERRILATLG 228
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 88 PALSSKYINTPSRLLNGFRCLMTTAG 165
PA+ YINT ++N R ++ T G
Sbjct: 203 PAVDMNYINTKQHMINSERRILATLG 228
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 234 RRQSVQATFDTLDSDHIQILCPCVVGAVDYCSH 332
+ S++ +FDTLD ++ L C AV++ +H
Sbjct: 126 KMSSMECSFDTLDEKLVKALDECYHVAVEHNTH 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,754,033
Number of Sequences: 27780
Number of extensions: 234066
Number of successful extensions: 692
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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