Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10a05
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191 73 4e-14
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095... 71 1e-13
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 31 0.21
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866 27 2.0
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533... 26 4.6
11_06_0129 - 20397179-20397537,20397749-20400497 26 6.0
05_07_0144 - 28007477-28008412 26 6.0
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 26 6.0
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 26 6.0
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 25 8.0
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715... 25 8.0
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942 25 8.0
>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
Length = 82
Score = 72.9 bits (171), Expect = 4e-14
Identities = 37/75 (49%), Positives = 48/75 (64%)
Frame = -3
Query: 251 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 72
MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 71 RMGESDDCIVRLTKK 27
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>03_05_0610 -
26108546-26108671,26108739-26108789,26109410-26109542,
26109633-26109682
Length = 119
Score = 71.3 bits (167), Expect = 1e-13
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = -3
Query: 251 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 72
MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 71 RMGESDDCIVRLTKK 27
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 259 HIKCRTTPVNSLTCTARGNARPATASST 176
H++CR+TP +SLT N PA++SS+
Sbjct: 81 HLRCRSTPRDSLTYNTLLNHLPASSSSS 108
>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
Length = 785
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 272 PCGRTYKMQNDAGEFVDLY-CPRKCSASNRLI 180
P G+ + Q D G ++L CP +CS + +L+
Sbjct: 255 PTGKDIQQQRDRGGPIELLVCPSRCSRTKQLV 286
>02_05_1007 +
33452774-33452993,33453028-33453122,33453208-33453329,
33453392-33453694,33454657-33454918,33455039-33455140,
33455931-33457151,33457250-33457342
Length = 805
Score = 26.2 bits (55), Expect = 4.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 257 YKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCG 81
YK +D + DL+ P +C + + IH KD V L DV A AA + +V G
Sbjct: 82 YKQPSDP-QMKDLFLPFRCFCTRKDIHCKD---VVLDDHDVSKAIVEFAAHAAIEKLVVG 137
Query: 80 AIRRMG 63
A R G
Sbjct: 138 ATARGG 143
>11_06_0129 - 20397179-20397537,20397749-20400497
Length = 1035
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 127 AGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFC 249
AGS+S+ + + +L + +L+ LG S NS + FC
Sbjct: 20 AGSSSSSNATADELALLSFKSMLSSPSLGLMASWNSSSHFC 60
>05_07_0144 - 28007477-28008412
Length = 311
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 7 FLASIPSFFVNLTMQSSDSP---ILRIAPQTTYILDVSAARPVAGSTSAITSCTE 162
F + F++L+ SS SP ++APQTT I ++A V STSA + E
Sbjct: 29 FREEVAPGFLSLS-PSSVSPGDAAAQLAPQTTTITTSNSAAAVGNSTSASGTTAE 82
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 244 TTPVNSLTCTARGNARPATASSTL--RTMLQC 155
TT S C RG++ P+TA + L R M +C
Sbjct: 371 TTVAESNPCRCRGHSTPSTARAALWPRCMTRC 402
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 256 IKCRTTPVNSLTCTARGNARPATASSTLRTMLQCS 152
++CR TPV S T + N RP + ++ QCS
Sbjct: 413 VECRHTPVVSRTYST--NKRPLPTTEVVKLTEQCS 445
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 83 HRQHTF*MCQQHDLWRGLRQQSLAAL 160
+R+++F + HDL+ GLR+ +L AL
Sbjct: 883 NREYSFPAEEVHDLFTGLRELNLIAL 908
>06_02_0322 +
14369221-14369540,14370240-14370918,14371347-14371573,
14372121-14372312,14372394-14372550,14373860-14374093
Length = 602
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 221 LYCPRKCSASNRLIHAKDHASVQLVIADVDPA 126
+ C R +ASN K HAS ++DVD A
Sbjct: 158 ILCVRSGTASNPADSGKVHASHGFYVSDVDAA 189
>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
Length = 1020
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 138 VSNH*LH*SMVLSVDEAVAG-RAFPRAVQVNEFTGVVLHFICTSTRYTEL 284
V N+ LH S+ + + G + F + VN FTGV+ H + + T+L
Sbjct: 245 VGNNMLHGSIPSDIGRMLPGIQVF--GLDVNRFTGVIPHSLSNLSTLTDL 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,759,294
Number of Sequences: 37544
Number of extensions: 162098
Number of successful extensions: 532
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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